SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77037

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene77037
GGAGAAGCCATTGGAAAGATTCTTACTCTGCATCTACTGGCTAGCTGTTACTTGCTTTGCCATTCTACGCTTTTACAATATTTCCAAGAACAGTATGATTGAGCGGATACTTCTTCGAAAATACTACCATTTGTTGGCCATCATAATGTTTGTGCCAGCTCTTCTATTTGATAATTCTTGAAACTTGCATTTGGAGCAGCGTTGGCGGTTTTTCAGTACTGGAGATGATTAGAATTTGGC

Ace file of the UniGene sp_v3.0_unigene77037

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dolichol kinase [Arabidopsis thaliana] gb\|AEE77982.1\| dolichol kinase [Arabidopsis thaliana]	-	-	2.0e-13	59%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	67%

Source	ECs	Term	Type	e value	Identity
Sma3	Dolichol kinase.	EC:2.7.1.108	-	9.26e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	N-Glycan biosynthesis	00510		9.26e-06	%
Sma3	Metabolic pathways	01100		9.26e-06	%

Source	Gene names
Sma3	GSVIVT00022188001; POPTRDRAFT_876331; RCOM_0472880; VITISV_021582;

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-
Sma3	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidate cytidylyltransferase	IPR000374	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G45040.1	phosphatidate cytidylyltransferase family protein chr3:16472801-16475702 REVERSE LENGTH=569	7.0e-18	59%
RefSeq	Arabidopsis thaliana	NP_190090.2	dolichol kinase [Arabidopsis thaliana]	9.0e-18	59%
RefSeq	Populus trichocarpa	XP_002313531.1	predicted protein [Populus trichocarpa]	3.0e-19	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1LTM1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 155 aas, your sequence is shorter than subject: 60 - 579

Fln protein: EKPLERFLLCIYWLAVTCFAILRFYNISKNSMIERILLRKYYHLLAIIMFVPALLFDNS*

Protein Length: 61

Fln nts: GGAGAAGCCATTGGAAAGATTCTTACTCTGCATCTACTGGCTAGCTGTTACTTGCTTTGCCATTCTACGCTTTTACAATATTTCCAAGAACAGTATGATTGAGCGGATACTTCTTCGAAAATACTACCATTTGTTGGCCATCATAATGTTTGTGCCAGCTCTTCTATTTGATAATTCTTGAAACTTGCATTTGGAGCAGCGTTGGCGGTTTTTCAGTACTGGAGATGATTAGAATTTGGC

Fln Alignment:

GD4IA4402EG6TL___KPLERFLLCIYWLAVTCFAILRFYNISKNSMIERILLRKYYHLLAIIMFVPALLF
I1LTM1_______________EPSKRLTLCIYWVCIICVSVLRFYNISKNSKIERILLRKYYHLMAVSMFLPALIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain