SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77022

Length: 183 nt

UniGene Fasta

>sp_v3.0_unigene77022
CCATTGGATCCACATGAACCTGAGAACACTGCAGAGGCCATCAGTCGCTGGGGGCTCGGATACATAGTACTCACCAGTGTTGATAGAGATGATCTTGCAGACAGTGGTGCACGCCATTTTGCAGAGACCATTATGAAGATAAAGCAAAAGGCACCTCAGATTCTTGTAGAAGCACTAACAGGA

Ace file of the UniGene sp_v3.0_unigene77022

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoyl synthase, mitochondrial n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=LIPA_COPC7	-	-	7.0e-26	95%
FL-Next	sp=Lipoyl synthase, mitochondrial; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Lipoic acid synthase	-	-	2.404e-16	-

Source	Gene names
Sma3	At2g20860; B1143G03.28; CHLREDRAFT_194766; CHLREDRAFT_196092; GSVIVT00002605001; GSVIVT00003955001; H0523F07.4; LAS; LIP1; LIP1p; LIPA1; LIPA2; MICPUCDRAFT_20781; MICPUCDRAFT_4033; MICPUN_60627; MICPUN_86513; OSJNBa0006M15.16; OSTLU_31232; OSTLU_32294; Os

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	lipoate synthase activity	GO:0016992	Molecular Function	-
Sma3		GO:0017140	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	glycine catabolic process	GO:0006546	Biological Process	-
Sma3	lipoate biosynthetic process	GO:0009107	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoate synthase	IPR003698	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20860.1	LIP1 lipoic acid synthase 1 chr2:8979636-8980983 FORWARD LENGTH=374	5.0e-20	59%
RefSeq	Arabidopsis thaliana	NP_179682.1	lipoic acid synthase 1 [Arabidopsis thaliana]	7.0e-20	59%
RefSeq	Populus trichocarpa	XP_002306361.1	predicted protein [Populus trichocarpa]	5.0e-21	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNH7

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 61 - 386

Fln protein: PLDPHEPENTAEAISRWGLGYIVLTSVDRDDLADSGARHFAETIMKIKQKAPQILVEALTG

Protein Length: 62

Fln nts: CCATTGGATCCACATGAACCTGAGAACACTGCAGAGGCCATCAGTCGCTGGGGGCTCGGATACATAGTACTCACCAGTGTTGATAGAGATGATCTTGCAGACAGTGGTGCACGCCATTTTGCAGAGACCATTATGAAGATAAAGCAAAAGGCACCTCAGATTCTTGTAGAAGCACTAACAGGA

Fln Alignment:

GD4IA4402DGQGR___PLDPHEPENTAEAISRWGLGYIVLTSVDRDDLADSGARHFAETIMKIKQKAPQILVEAL
A9NNH7_______________PPDPNEPTNVAEAIVSWGLDYVVLTSVDRDDLPDQGSGHFAKTVQKLKQLKPKMLVEAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain