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UniGene Name: sp_v3.0_unigene76987
Length: 190 nt
 UniGene Fasta
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| >sp_v3.0_unigene76987
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Ace file of the UniGene sp_v3.0_unigene76987
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Ubiquitin carrier protein (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q5YJR0_HYAOR | - | - | 4.0e-16 | 97% |
| FL-Next | tr=Ubiquitin-conjugating enzyme UBC1; Picea abies (Norway spruce) (Picea excelsa). | - | - | 0.0 | 100% |
| Sma3 | Ubiquitin carrier protein | - | - | 0.0 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases). | EC:6.3.2.- | - | 0.0 | - |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Tryptophan metabolism | 00380 | 0.0 | % | |
| Sma3 | Biosynthesis of siderophore group nonribosomal peptides | 01053 | 0.0 | % | |
| Sma3 | Ubiquitin--protein ligase. | EC:6.3.2.19 | - | 2.224e-18 | - |
| Source | Gene names |
|---|---|
| Sma3 | AT5G41700; At1g16890; At1g64230; At1g78870; At2g16740; At3g08690; At3g08700; At4g27960; At5g41700; At5g53300; At5g56150; B0811B10.8; B1043F11.37; CHLREDRAFT_129070; CHLREDRAFT_152525; CHLREDRAFT_160028; Elr; F17F16.19; F17O14.16; F17O14.17; F22C12.2; F6I1 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | UBC13-MMS2 complex | GO:0031372 | Cellular Component | 0.0 | - |
| Sma3 | ubiquitin-protein ligase activity | GO:0004842 | Molecular Function | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | small conjugating protein ligase activity | GO:0019787 | Molecular Function | 0.0 | - |
| Sma3 | ubiquitin-dependent protein catabolic process | GO:0006511 | Biological Process | 0.0 | - |
| Sma3 | modification-dependent protein catabolic process | GO:0019941 | Biological Process | 0.0 | - |
| Sma3 | post-translational protein modification | GO:0043687 | Biological Process | 0.0 | - |
| Sma3 | regulation of protein metabolic process | GO:0051246 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Ubiquitin-associated/translation elongation factor EF1B, N-terminal | IPR000449 | - | 0.0 | - |
| Sma3 | Ubiquitin-conjugating enzyme, E2 | IPR000608 | - | 0.0 | - |
| Sma3 | Thioredoxin domain | IPR013766 | - | 0.0 | - |
| Sma3 | Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote | IPR015940 | - | 0.0 | - |
| Sma3 | Ubiquitin-conjugating enzyme/RWD-like | IPR016135 | - | 0.0 | - |
| Sma3 | IPR017936 | - | 0.0 | - | |
| Sma3 | Thioredoxin, conserved site | IPR017937 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT5G53300.1 | UBC10 ubiquitin-conjugating enzyme 10 chr5:21632802-21633989 REVERSE LENGTH=148 | 4.0e-23 | 97% |
| RefSeq | Arabidopsis thaliana | NP_568788.1 | ubiquitin-conjugating enzyme E2 10 [Arabidopsis thaliana] | 5.0e-23 | 97% |
| RefSeq | Populus trichocarpa | XP_002325633.1 | predicted protein [Populus trichocarpa] | 5.0e-23 | 97% |
| Full-Lengther Next Prediction |
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Fln status: Misassembled
Fln database: coniferopsida.fasta
Fln subject: Q4VSV2
Fln msg: Coding sequence with some errors, ERROR#1, contains sense and antisense hits!!!, putative chimeric sequence,
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
