SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76940

Length: 140 nt

UniGene Fasta

>sp_v3.0_unigene76940
TAGGTCCTAAGATGGCTCACCTGATCATGAATGTTGGTTGGAAGATGTCCAAGGAATTTGTGTGGACACTCACGTGCATCGTATCTGTAATAGACTTGGCTGGGTTTCATTTTCAGGATGAACAGAATACAAAGCACCAG

Ace file of the UniGene sp_v3.0_unigene76940

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO	-	-	7.0e-10	83%
FL-Next	tr=Endonuclease III, putative; Ricinus communis (Castor bean).	-	-	0.0	84%

Source	Gene names
Sma3	AT1G05900; At1g05900; At2g31450; GSVIVT00001931001; POPTRDRAFT_763841; RCOM_0143730; T20M3.18; VITISV_017352; nth1;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	base-excision repair	GO:0006284	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	Endonuclease III, conserved site-2	IPR004036	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G31450.1	ATNTH1 DNA glycosylase superfamily protein chr2:13401318-13404134 REVERSE LENGTH=379	2.0e-11	80%
RefSeq	Arabidopsis thaliana	NP_565725.1	endonuclease III [Arabidopsis thaliana]	3.0e-11	80%
RefSeq	Populus trichocarpa	XP_002309812.1	predicted protein [Populus trichocarpa]	1.0e-10	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T798

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 41 and 41, Unexpected STOP codon at 3' end. Distance to subject end: 72 aas, your sequence is shorter than subject: 40 - 357

Fln protein: GPKMAHLIMNVGxxDVQGICVDTHVHRICNRLGWVSFSG*

Protein Length: 41

Fln nts: TAGGTCCTAAGATGGCTCACCTGATCATGAATGTTGGTxxxxxxGATGTCCAAGGAATTTGTGTGGACACTCACGTGCATCGTATCTGTAATAGACTTGGCTGGGTTTCATTTTCAGGATGAACAGAATACAAAGCACCAG

Fln Alignment:

GD4IA4402E0BCT___GPKMAHLIMNVGWEDVQGICVDTHVHRICNRLGWVSFSG*TEYK
B9T798_______________GPKMAHLVMNVAWDDVQGICVDTHVHRICNRLGWVSRPG-TEQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain