SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76909

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene76909
GGTTCTGGACATGCAGATTGATTCATATTTTGATGGTCAGTTGTTCAAAAACAAAGTTTGGTTAGGGACAGTTGAAGGTGGTCTTCCTGTGTACTTCATTGAGCCTCACCATCCAGCAAAGTTCTTTTGGCGAGGACAGTTCTATGGAGAGGGTGACGATTTCAGACG

Ace file of the UniGene sp_v3.0_unigene76909

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	starch synthase, isoform V [Vigna unguiculata]	-	-	6.0e-20	79%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	80%
Sma3	Starch synthase IV	-	-	3.168e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Starch synthase.	EC:2.4.1.21	-	9.609e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		9.609e-09	%
Sma3	Metabolic pathways	01100		9.609e-09	%

Source	Gene names
Sma3	AT4g18240; At4g18240; GSVIVT00003411001; OSJNBa0053E05.15; Os01g0720600; Os05g0533600; OsI_03547; OsI_20755; OsJ_03283; OsJ_19328; P0690B02.8-1; P0690B02.8-2; P0690B02.8-3; PHYPADRAFT_111318; PHYPADRAFT_117840; PHYPADRAFT_121916; POPTRDRAFT_173714; RCOM_0

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	starch synthase activity	GO:0009011	Molecular Function	-
Sma3	glucan biosynthetic process	GO:0009250	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	IPR006137	-	-
Sma3	NADH-ubiquinone oxidoreductase, 20 Kd subunit	IPR006138	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18240.1	ATSS4, SSIV, SS4 starch synthase 4 chr4:10082221-10087044 FORWARD LENGTH=1040	1.0e-24	75%
RefSeq	Arabidopsis thaliana	NP_193558.3	starch synthase 4 [Arabidopsis thaliana]	2.0e-24	75%
RefSeq	Populus trichocarpa	XP_002298514.1	predicted protein, partial [Populus trichocarpa]	4.0e-25	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TK12

Fln msg: Distance to subject end: 387 aas, your sequence is shorter than subject: 55 - 1011

Fln protein: VLDMQIDSYFDGQLFKNKVWLGTVEGGLPVYFIEPHHPAKFFWRGQFYGEGDDFR

Protein Length: 56

Fln nts: GGTTCTGGACATGCAGATTGATTCATATTTTGATGGTCAGTTGTTCAAAAACAAAGTTTGGTTAGGGACAGTTGAAGGTGGTCTTCCTGTGTACTTCATTGAGCCTCACCATCCAGCAAAGTTCTTTTGGCGAGGACAGTTCTATGGAGAGGGTGACGATTTCAGACG

Fln Alignment:

GD4IA4402ELKC6___VLDMQIDSYFDGQLFKNKVWLGTVEGGLPVYFIEPHHPAKFFWRGQFYGEGDDFR
D7TK12_______________VLDMELESYFDGRLFRNKVWVGTVEG-LPVYFIEPHHPSKFFWRGTVYGEHDDFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain