SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76774

Length: 272 nt

UniGene Fasta

>sp_v3.0_unigene76774
TCAACGTCAACACAAAGGGAGCTCAAATATAGTGGAATTCGCCAAACTATGCCGGAAGCTTCAAATCCTTCTGCATGTGTCGACAGCTTACGTTATCGGATATGGAAAAGGAAGAATTATGGAGAAGCCTGTGAAGATGGGAGAAACTATAACGGCCGGCAATGGACCTGAGGACGAAGGCGGTCCACCTTTAGTAGACATTAAAGCGGAAATTGATTTGCTGGAGAAAACACTCACCGAGATACATATGAACTCGTCTACCCGCAGAGGCC

Ace file of the UniGene sp_v3.0_unigene76774

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative fatty acyl coA reductase [Oryza sativa Japonica Group] dbj\|BAD31294.1\| putative fatty acyl coA reductase [Oryza sativa Japonica Group]	-	-	2.0e-09	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Male sterility	IPR004262	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSE8

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 90 - 296

Fln protein: QRQHKGSSNIVEFAKLCRKLQILLHVSTAYVIGYGKGRIMEKPVKMGETITAGNGPEDEGGPPLVDIKAEIDLLEKTLTEIHMNSSTRRG

Protein Length: 91

Fln nts: TCAACGTCAACACAAAGGGAGCTCAAATATAGTGGAATTCGCCAAACTATGCCGGAAGCTTCAAATCCTTCTGCATGTGTCGACAGCTTACGTTATCGGATATGGAAAAGGAAGAATTATGGAGAAGCCTGTGAAGATGGGAGAAACTATAACGGCCGGCAATGGACCTGAGGACGAAGGCGGTCCACCTTTAGTAGACATTAAAGCGGAAATTGATTTGCTGGAGAAAACACTCACCGAGATACATATGAACTCGTCTACCCGCAGAGGCC

Fln Alignment:

GD4IA4402EZVWN___KGSSNIVEFAKLCRKLQILLHVSTAYVIGYGKGRIMEKPVKMGETITAGNGPEDEGGPPL-VDIKAEIDLLEKTLTEIHMNSS
A9NSE8_______________RGAENIVEFAKRCRKLQILLHVSTAYVVGRGSGRIKESPLKIGESMTAGNELEDENGPPLSLDIEAEFGLLENTLDKLHMDSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain