SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76664

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene76664
TCACAGCTTGTTGCACCCCTAACAAATTTGATGAGGAAGGGGGCATTCAGTTGGACGGATACAGCGCAGCGAACCTTTGACAAGCTCAAGGAGGTTATGAGCAGCTGCCCAGTTCTTGCATTGACGGATTGTACACAGCCATTCGTTTTGGAGTGTGATGCATCAGGA

Ace file of the UniGene sp_v3.0_unigene76664

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD4_SILLA	-	-	2.0e-10	53%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	43%
Sma3	cDNA clone:J023142E02, full insert sequence	-	-	5.361e-06	-

Source	Gene names
Sma3	Os08g0451600;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92523

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 56 - 158

Fln protein: SQLVAPLTNLMRKGAFSWTDTAQRTFDKLKEVMSSCPVLALTDCTQPFVLECDASG

Protein Length: 57

Fln nts: TCACAGCTTGTTGCACCCCTAACAAATTTGATGAGGAAGGGGGCATTCAGTTGGACGGATACAGCGCAGCGAACCTTTGACAAGCTCAAGGAGGTTATGAGCAGCTGCCCAGTTCTTGCATTGACGGATTGTACACAGCCATTCGTTTTGGAGTGTGATGCATCAGGA

Fln Alignment:

GD4IA4402DMKHV___QLVAPLTNLMRKGAFSWTDTAQRTFDKLKEVMSSCPVLALTDCTQPFV
P92523_______________KIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain