SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76583

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene76583
GGTGGACTTGTCGTAAACAATGACACTGATATGACATGGGAAAGGACGATACCCTGGATGCGAAGCATCACGAAGTTACCCATTGTTATCAAAGGAATTCAATGTGTCCATGTTAGTAGGGTGGATGCATAAAGATGTCCAGATGCTGACATGGGCTACCAGGATGCCGTTCTAGCTTGCGAAGCTGGTTGCGAAGGTATTGTGCTATCGAATCATGGAGATGAGGCCGTCAATTAGAGTATGCTCTGCCACCGATCGAGTTGTTGTACAAGATCAGACAACAACGCCCCGATGTGTTCGAGAAGACTGAAGTTTACATCGATGGAGGAATCCGCCGTGGAACGGACGTGGTTAAAGCACTGTGTTTGGGTGCAAAAGCTGTTGGCTTGGGACGCGCATTCCTGTACGC

Ace file of the UniGene sp_v3.0_unigene76583 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome b2, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239] gb\|EDK45377.1\| cytochrome b2, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239]	-	-	2.0e-23	52%
FL-Next	tr=Glycerate oxidase; Pinus pinaster (Maritime pine).	-	-	0.0	35%

Source	Gene names
Sma3	OSTLU_37603;

Source	GOs	Term	Type	e value	Identity
Sma3	FMN binding	GO:0010181	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	FMN-dependent dehydrogenase	IPR000262	-	-
Sma3	Alpha-hydroxy acid dehydrogenase, FMN-dependent	IPR012133	-	-
Sma3		IPR017934	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G14150.1	Aldolase-type TIM barrel family protein chr3:4690667-4692679 REVERSE LENGTH=363	7.0e-17	49%
RefSeq	Arabidopsis thaliana	NP_001078152.1	Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	9.0e-17	49%
RefSeq	Populus trichocarpa	XP_002304232.1	predicted protein [Populus trichocarpa]	6.0e-16	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: F4MKM3

Fln msg: Separated hits, possible frame ERROR between 255 and 264, Distance to subject end: 51 aas, your sequence is shorter than subject: 136 - 364

Fln protein: GGLVVNNDTDMTWERTIPWMRSITKLPIVIKGIQCVHVSRVDA*RCPDADMGYQDAVLACEAGCEGIVLSNHGDEAVN*SMLCHxxxxLYKIRQQRPDVFEKTEVYIDGGIRRGTDVVKALCLGAKAVGLGRAFLY

Protein Length: 137

Fln nts: GGTGGACTTGTCGTAAACAATGACACTGATATGACATGGGAAAGGACGATACCCTGGATGCGAAGCATCACGAAGTTACCCATTGTTATCAAAGGAATTCAATGTGTCCATGTTAGTAGGGTGGATGCATAAAGATGTCCAGATGCTGACATGGGCTACCAGGATGCCGTTCTAGCTTGCGAAGCTGGTTGCGAAGGTATTGTGCTATCGAATCATGGAGATGAGGCCGTCAATTAGAGTATGCTCTGCCACCGxxxxxxxxxGTTGTACAAGATCAGACAACAACGCCCCGATGTGTTCGAGAAGACTGAAGTTTACATCGATGGAGGAATCCGCCGTGGAACGGACGTGGTTAAAGCACTGTGTTTGGGTGCAAAAGCTGTTGGCTTGGGACGCGCATTCCTGTACGC

Fln Alignment:

GD4IA4402DE92F___DTDMTWERTIPWMRSITKLPIVIKGIQCVHVSRVDA*RCPDADMGYQDAVLACEAGCEGIVLSNHGDEAVN*SMLCHRxxxLYKIRQQRPDVFEKTEVYIDGGIRRGTDVVKALCLGAKAVGLGRAFLY
F4MKM3_______________DSSFSW-KDIKWLQSLTSLPILIKGI-----------------LTAEDAELAIQAGFAGIIVSNHGARQL---ILCHQxxxLWLIEEVTKAVRGRVPVLFDGGIRRGTDVFKALAIGAQAVLVGRPIIY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain