SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76557

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene76557
ATCCTTATTTTAATGAACCTGGATTTGAGAAACAGATTGGTTCAGCGATAGGGGAGAAGAACTCGTTAGCCTACAAAGAAAACTCTTTTCTCCTATCATGCAAGTCAATGTTGTACGTATTGCGAAAGCCTCCAAAGGTAGAAATCTCACGAGATTTTCATTTACAGTTATCTTTTTTAATCATTCTTTGTCTAGGAATCATTGTAAATACACCCATGCTCATCATTTGTGCAGCATTTTGAGATG

Ace file of the UniGene sp_v3.0_unigene76557

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana] sp\|Q9ZVX1.1\|UBC23_ARATH RecName: Full=Probable ubiquitin-conjugating enzyme E2 23; AltName: Full=Ubiquitin carrier protein 23 gb\|AAC64223.1\| putative ubiquitin-conjugating enzyme [Arabidop	-	-	3.0e-13	53%
FL-Next	sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%

Source	Gene names
Sma3	AT2G33770; At2g33770; OJ1214_E03.18; Os01g0125900; Os05g0557700; OsI_00213; OsI_20940; OsJ_00211; OsJ_19508; P0037C04.36; P0044F08.17; PHO2; PHYPADRAFT_130636; POPTRDRAFT_555800; POPTRDRAFT_859165; POPTRDRAFT_876817; RCOM_0978050; T1B8.8; UBC24;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-
Sma3	phosphate ion homeostasis	GO:0055062	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G16920.1	UBC23, PFU2 ubiquitin-conjugating enzyme 23 chr2:7334559-7338827 REVERSE LENGTH=1102	2.0e-17	53%
RefSeq	Arabidopsis thaliana	NP_179284.1	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana]	3.0e-17	53%
RefSeq	Populus trichocarpa	XP_002313703.1	predicted protein [Populus trichocarpa]	2.0e-17	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVX1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 46 aas, your sequence is shorter than subject: 80 - 1102

Fln protein: PYFNEPGFEKQIGSAIGEKNSLAYKENSFLLSCKSMLYVLRKPPKVEISRDFHLQLSFLIILCLGIIVNTPMLIICAAF*

Protein Length: 81

Fln nts: ATCCTTATTTTAATGAACCTGGATTTGAGAAACAGATTGGTTCAGCGATAGGGGAGAAGAACTCGTTAGCCTACAAAGAAAACTCTTTTCTCCTATCATGCAAGTCAATGTTGTACGTATTGCGAAAGCCTCCAAAGGTAGAAATCTCACGAGATTTTCATTTACAGTTATCTTTTTTAATCATTCTTTGTCTAGGAATCATTGTAAATACACCCATGCTCATCATTTGTGCAGCATTTTGAGATG

Fln Alignment:

GD4IA4402D2YZ5___PYFNEPGFEKQIGSAIGEKNSLAYKENSFLLSCKSMLYVLRKPPK--VEISRDFHLQLSFLII
Q9ZVX1_______________PYFNEAGYDKQVGTAEGEKNSLGYNENTFLLNCKTMMYLMRKPPKDFEELIKDHFRKRGYYIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain