SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76542

Length: 264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene76542
ACCGTATCCATGGAAACAATCCTTGGATACGGTGGATCCTTTGTGATGGTGCTTGTGATCGTGGCTTTCATCAGAAATGCCTGGAACCTCCTTTGGAAACTGCAAATATTCCTCCTGAAGGCGAGGGTTGGCTCTGCCCAGAGTGTGACTGCAAAGTTGACTGCTTTGATTTAGTCAATGATCACTTTGGAACAACTTTTGAAATTGGGGATAGCTGGGAGAAAGTTTTTGCTGAGGCAGTTGTGAGCGCAGATGGAGATGAGA

Ace file of the UniGene sp_v3.0_unigene76542 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAT 3.1 [Arabidopsis thaliana]	-	-	1.0e-24	64%
FL-Next	sp=Homeobox protein HAT3.1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%

Source	Gene names
Sma3	At3g19510; GSVIVT00007716001; HAT3.1; HAZ1; HOX1A; Hox1a; Hox1b; Hox2a; Hox2b; MLD14.25; MLD14.37; Os06g0229300; OsI_22252; OsJ_27188; P0525F01.18; PHYPADRAFT_170895; PHYPADRAFT_75761; POPTRDRAFT_753021; PRH; RCOM_0174220; VITISV_006312;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3		IPR012287	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19510.1	HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain chr3:6763205-6766049 REVERSE LENGTH=723	9.0e-31	64%
RefSeq	Arabidopsis thaliana	NP_188582.1	homeobox protein HAT3.1 [Arabidopsis thaliana]	1.0e-30	64%
RefSeq	Populus trichocarpa	XP_002300247.1	predicted protein [Populus trichocarpa]	8.0e-30	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q04996

Fln msg: Distance to subject end: 365 aas, your sequence is shorter than subject: 87 - 723

Fln protein: RIHGNNPWIRWILCDGACDRGFHQKCLEPPLETANIPPEGEGWLCPECDCKVDCFDLVNDHFGTTFEIGDSWEKVFAEAVVSADGDE

Protein Length: 88

Fln nts: ACCGTATCCATGGAAACAATCCTTGGATACGGTGGATCCTTTGTGATGGTGCTTGTGATCGTGGCTTTCATCAGAAATGCCTGGAACCTCCTTTGGAAACTGCAAATATTCCTCCTGAAGGCGAGGGTTGGCTCTGCCCAGAGTGTGACTGCAAAGTTGACTGCTTTGATTTAGTCAATGATCACTTTGGAACAACTTTTGAAATTGGGGATAGCTGGGAGAAAGTTTTTGCTGAGGCAGTTGTGAGCGCAGATGGAGATGAGA

Fln Alignment:

GD4IA4402EQFPC___ILCDGACDRGFHQKCLEPPLETANIPPEGEGWLCPECDCKVDCFDLVNDHFGTTFEIGDSWEKVFAEAVVSADG
Q04996_______________ILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGCDCKDDSLDLLNDSLGTKFSVSDSWEKIFPEAAAALVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain