UniGene Name: sp_v3.0_unigene76541
Length: 199 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene76541
C |
Ace file of the UniGene sp_v3.0_unigene76541 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Pectinesterase n=2 Tax=Solanum tuberosum RepID=E8ZG61_SOLTU | - | - | 6.0e-27 | 84% |
FL-Next | sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 78% |
Sma3 | Pectinesterase | - | - | 0.0 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Pectinesterase. | EC:3.1.1.11 | - | 0.0 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Pentose and glucuronate interconversions | 00040 | 0.0 | % | |
Sma3 | Starch and sucrose metabolism | 00500 | 0.0 | % | |
Sma3 | Metabolic pathways | 01100 | 0.0 | % |
Source | Gene names |
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Sma3 | ARATH1; ARATH12; ARATH16; ARATH17; ARATH20; ARATH22; ARATH23; ARATH25; ARATH27; ARATH28; ARATH30; ARATH32; ARATH34; ARATH35; ARATH36; ARATH39; ARATH4; ARATH40; ARATH41; ARATH42; ARATH44; ARATH45; ARATH47; ARATH5; ARATH58; ARATH6; ARATH61; ARATH8; AT3G1072 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | extracellular region | GO:0005576 | Cellular Component | 0.0 | - |
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | plant-type cell wall | GO:0009505 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | enzyme inhibitor activity | GO:0004857 | Molecular Function | 0.0 | - |
Sma3 | translation release factor activity, codon specific | GO:0016149 | Molecular Function | 0.0 | - |
Sma3 | pectinesterase activity | GO:0030599 | Molecular Function | 0.0 | - |
Sma3 | aspartyl esterase activity | GO:0045330 | Molecular Function | 0.0 | - |
Sma3 | translational termination | GO:0006415 | Biological Process | 0.0 | - |
Sma3 | fruit ripening | GO:0009835 | Biological Process | 0.0 | - |
Sma3 | cell wall modification | GO:0042545 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Pectinesterase, catalytic | IPR000070 | - | 0.0 | - |
Sma3 | Peptide chain release factor class I/class II | IPR000352 | - | 0.0 | - |
Sma3 | Aminoacyl-tRNA synthetase, class I, conserved site | IPR001412 | - | 0.0 | - |
Sma3 | Peptide chain release factor 1 | IPR004373 | - | 0.0 | - |
Sma3 | Metallophosphoesterase domain | IPR004843 | - | 0.0 | - |
Sma3 | Peptide chain release factor | IPR005139 | - | 0.0 | - |
Sma3 | Pectinesterase inhibitor | IPR006501 | - | 0.0 | - |
Sma3 | Carbohydrate-binding/sugar hydrolysis domain | IPR006633 | - | 0.0 | - |
Sma3 | Pectin lyase fold | IPR012334 | - | 0.0 | - |
Sma3 | Protein kinase, ATP binding site | IPR017441 | - | 0.0 | - |
Sma3 | Pectinesterase, active site | IPR018040 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT3G43270.1 | Plant invertase/pectin methylesterase inhibitor superfamily chr3:15222402-15225124 REVERSE LENGTH=527 | 6.0e-31 | 71% |
RefSeq | Arabidopsis thaliana | NP_189913.3 | pectinesterase 32 [Arabidopsis thaliana] | 8.0e-31 | 71% |
RefSeq | Populus trichocarpa | XP_002317777.1 | predicted protein, partial [Populus trichocarpa] | 3.0e-31 | 75% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: A9NVV0
Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 66 - 557
Fln protein:
P
Protein Length:
67
Fln nts:
C
Fln Alignment:
GD4IA4402C7CHU___PTYLGRPWMAYSRTVYMQSVLGDVIDPAGWLEWSGDFALKTLYYGEYMNTGPGAATSKRVKWPGYR
A9NVV0_______________PTYLGRPWKEYSRTVFMQSYIDGFIQPAGWLEWDGDFALKTLYYGEYMNTGPGSGTGNRVKWPGYR
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain