SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76530

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene76530
GGCTCCAACGAGGATAAGGCCAAAGTTATCCTCGTTGGAGCCACCCATCATAGGAACAAGCATCGAAGGGATGATAACAGTGGTGCCAACGAGGATAAGGCCAAAGTTATCCAGACATTACTGTTTGTAGCAGGTCTTAATACACTATTTCAAACCACATTTGGTAGTAGGCTGCCCGCTGTTATAGGAGGCTCATATGCC

Ace file of the UniGene sp_v3.0_unigene76530

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleobase-ascorbate transporter 5 [Arabidopsis thaliana] sp\|Q8RWE9.1\|NAT5_ARATH RecName: Full=Nucleobase-ascorbate transporter 5; Short=AtNAT5 gb\|AAM13136.1\| permease [Arabidopsis thaliana] gb\|AAP68326.1\| At5g49990 [Arabidopsis thaliana] dbj\|BAF01588.1\|	-	-	6.0e-10	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Nucleobase ascorbate transporter	-	-	7.434e-28	-

Source	Gene names
Sma3	At1g10540; At1g60030; At2g05760; At2g34190; At5g49990; At5g62890; F13P17.3; GSVIVT00001487001; GSVIVT00016146001; GSVIVT00025941001; GSVIVT00028899001; GSVIVT00035852001; K9P8.13; LES1_20t00010; LOC_Os03g60880; MQB2.190; MQB2.21; NAT1; NAT2; NAT5; NAT6; N

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Xanthine/uracil permease	IPR006042	-	-
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49990.1	Xanthine/uracil permease family protein chr5:20337864-20341187 REVERSE LENGTH=528	5.0e-14	79%
RefSeq	Arabidopsis thaliana	NP_199810.2	nucleobase-ascorbate transporter 5 [Arabidopsis thaliana]	6.0e-14	79%
RefSeq	Populus trichocarpa	XP_002315809.1	nucleobase ascorbate transporter [Populus trichocarpa]	1.0e-14	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: Distance to subject end: 424 aas, your sequence is shorter than subject: 67 - 524

Fln protein: GSNEDKAKVILVGATHHRNKHRRDDNSGANEDKAKVIQTLLFVAGLNTLFQTTFGSRLPAVIGGSYA

Protein Length: 68

Fln nts: GGCTCCAACGAGGATAAGGCCAAAGTTATCCTCGTTGGAGCCACCCATCATAGGAACAAGCATCGAAGGGATGATAACAGTGGTGCCAACGAGGATAAGGCCAAAGTTATCCAGACATTACTGTTTGTAGCAGGTCTTAATACACTATTTCAAACCACATTTGGTAGTAGGCTGCCCGCTGTTATAGGAGGCTCATATGCC

Fln Alignment:

GD4IA4402DDHDF___GANEDKAKVIQTLLFVAGLNTLFQTTFGSRLPAVIGGSYA
B8LQ21_______________GNDHDKVRVIQTLLFVAGINTLLQSLFGTRLPTVVGGSFA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain