SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76526

Length: 203 nt

UniGene Fasta

>sp_v3.0_unigene76526
GCATGCTACATCTGCATGGCATTTCTTCGTGCTCATAAAACTGCTAGAAGACAATTACGTAATATCGGAGAGAGCATTGTTGATAAGGATGTAATTCGAGAAAGTAAGGAAGAAGGGGACCTAGCAACACAATTTCTACAACACATTAAGGCTGAATTCCCTCAGGTGTTGCCTGAGGTACGAAGAAAGAGTGTAACATACTG

Ace file of the UniGene sp_v3.0_unigene76526

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative plasmalemma Na+/H+ antiporter n=1 Tax=Solanum lycopersicum RepID=Q4W3B5_SOLLC	-	-	9.0e-13	55%
FL-Next	sp=Sodium/hydrogen exchanger 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Sma3	Putative Na/H antiporter	-	-	2.992e-09	-

Source	Gene names
Sma3	sos1; sos1b;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	-
Sma3	cation transport	GO:0006812	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Na+/H+ exchanger, isoforms 7/8	IPR018418	-	-
Sma3	Cation/H+ exchanger, CPA1 family	IPR018422	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01980.1	SOS1, ATSOS1, ATNHX7 sodium proton exchanger, putative (NHX7) (SOS1) chr2:457070-463145 FORWARD LENGTH=1146	7.0e-15	52%
RefSeq	Arabidopsis thaliana	NP_178307.2	sodium/hydrogen exchanger 7 [Arabidopsis thaliana]	9.0e-15	52%
RefSeq	Populus trichocarpa	XP_002315837.1	sodium proton exchanger, partial [Populus trichocarpa]	1.0e-15	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LKW9

Fln msg: Distance to subject end: 463 aas, your sequence is shorter than subject: 67 - 1146

Fln protein: ACYICMAFLRAHKTARRQLRNIGESIVDKDVIRESKEEGDLATQFLQHIKAEFPQVLPEVRRKSVTY

Protein Length: 68

Fln nts: GCATGCTACATCTGCATGGCATTTCTTCGTGCTCATAAAACTGCTAGAAGACAATTACGTAATATCGGAGAGAGCATTGTTGATAAGGATGTAATTCGAGAAAGTAAGGAAGAAGGGGACCTAGCAACACAATTTCTACAACACATTAAGGCTGAATTCCCTCAGGTGTTGCCTGAGGTACGAAGAAAGAGTGTAACATACTG

Fln Alignment:

GD4IA4402EUPM9___ACYICMAFLRAHKTARRQLRN-IGESIVDKDVIRESKEEGDLATQFLQHIKAEFPQVLPEVRRKSVTY
Q9LKW9_______________ACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSFPQVLRVVKTKQVTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain