SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76486

Length: 329 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene76486
GTCATTGCTGAAACAGACTTCTCGTACTGCTTTGGAGGATATAACACCAATGGGTGGTTTCCCTCATTATGGTGTGGTAAAAGATCATAATGTAATCATCTTTTACATTATGATCAGAGGATGTTGTATGGGCACTAAGAAGCGGGTGGTTACTTTGCGGCAGTCATTGCTGAAACAGACTTCTCGTACTGCTTTGGAGGAAATCAAGTTGAAGTTCATTGACACATCCTCTAAGTTTGGACATGGGCGATTCCAGACAACCCAGGAAAAGGCCAAGATTTTTGGTTACTTTGCGGCAGTCATTGCTGAAACAGACTTCTCGTACTGCT

Ace file of the UniGene sp_v3.0_unigene76486 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L3 (Fragment) n=12 Tax=Pinaceae RepID=O65076_PICMA	-	-	3.0e-35	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	60S ribosomal protein L3	-	-	0.0	-

Source	Gene names
Sma3	Sb51;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L3	IPR000597	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G61580.1	RPL3B, ARP2 R-protein L3 B chr1:22720833-22722402 REVERSE LENGTH=390	2.0e-36	67%
RefSeq	Arabidopsis thaliana	NP_176352.1	60S ribosomal protein L3-2 [Arabidopsis thaliana]	3.0e-36	67%
RefSeq	Populus trichocarpa	XP_002333867.1	predicted protein, partial [Populus trichocarpa]	9.00054e-42	78%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 109 - 389

Fln protein: SLLKQTSRTALEDITPMGGFPHYGVVKDHNVIIFYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGYFAAVIAETDFSYC

Protein Length: 110

Fln nts: GTCATTGCTGAAACAGACTTCTCGTACTGCTTTGGAGGATATAACACCAATGGGTGGTTTCCCTCATTATGGTGTGGTAAAAGATCATAATGTAATCATCTTTTACATTATGATCAGAGGATGTTGTATGGGCACTAAGAAGCGGGTGGTTACTTTGCGGCAGTCATTGCTGAAACAGACTTCTCGTACTGCTTTGGAGGAAATCAAGTTGAAGTTCATTGACACATCCTCTAAGTTTGGACATGGGCGATTCCAGACAACCCAGGAAAAGGCCAAGATTTTTGGTTACTTTGCGGCAGTCATTGCTGAAACAGACTTCTCGTACTGCT

Fln Alignment:

GD4IA4402EMOA2___EDITPMGGFPHYGVVKDHNVIIFYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGYFAA
A9NZI7_______________KDITPMGGFPHYGVLKDD-----YIMIRGCCVGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain