SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76464

Length: 290 nt

UniGene Fasta

>sp_v3.0_unigene76464
TCTGGACAATAACATCATTGCAATTGGCTTGGAGGATTCATCCATTCAAATATACAATGTTCGAGTTGATGAGGTAAAAGCAAAGCGCAAGGGCCACCAAAAGAAAATCACAGGCCTGGCTTTTTCACCCGGGCCTTTTCACATGTTTTTGAATGTGTTGGTACCTTCTGGAGCTGATGCCCAGTGGTCTCCTCATGATCCCCTATCTACTATTTCAAGTGCCATATACTCATGTGACAACGTCCTAGTTTATGCGAGCTTTTGGGCTTCTGTGATAGTGCAGTTCGAGT

Ace file of the UniGene sp_v3.0_unigene76464

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative WD-repeat protein [Arabidopsis thaliana]	-	-	4.0e-16	72%
FL-Next	sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Sma3	WD-repeat protein, putative	-	-	1.816e-09	-

Source	Gene names
Sma3	AT3G15880; At1g15750; At1g80490; At3g15880; At5g27030; CTV.2; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; GSVIVT00032753001; GSVIVT00032757001; LOC_Os03g14980; MtrDRAFT_AC147963g18v2; OJ1115_B04.1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15880.2	-	2.0e-20	72%
RefSeq	Arabidopsis thaliana	NP_001189905.1	Topless-related protein 4 [Arabidopsis thaliana]	2.0e-20	72%
RefSeq	Populus trichocarpa	XP_002324641.1	predicted protein [Populus trichocarpa]	7.0e-21	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q27GK7

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 96 - 1135

Fln protein: LDNNIIAIGLEDSSIQIYNVRVDEVKAKRKGHQKKITGLAFSPGPFHMFLNVLVPSGADAQWSPHDPLSTISSAIYSCDNVLVYASFWASVIVQFE

Protein Length: 97

Fln nts: TCTGGACAATAACATCATTGCAATTGGCTTGGAGGATTCATCCATTCAAATATACAATGTTCGAGTTGATGAGGTAAAAGCAAAGCGCAAGGGCCACCAAAAGAAAATCACAGGCCTGGCTTTTTCACCCGGGCCTTTTCACATGTTTTTGAATGTGTTGGTACCTTCTGGAGCTGATGCCCAGTGGTCTCCTCATGATCCCCTATCTACTATTTCAAGTGCCATATACTCATGTGACAACGTCCTAGTTTATGCGAGCTTTTGGGCTTCTGTGATAGTGCAGTTCGAGT

Fln Alignment:

GD4IA4402C9Y5F___DNNIIAIGLEDSSIQIYNVRVDEVKAKRKGHQKKITGLAFSPGPFHMFLNVLVPSGADAQ---WS
Q27GK7_______________DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFS-----NVLNVLVSSGADSQLCVWS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain