SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76459

Length: 307 nt

UniGene Fasta

>sp_v3.0_unigene76459
GCAAATGCTACATGGTACAGTTCTTGGTCAGCAAGCCATTCGTCTTTCTTGGGGACGGAGTCCTGCAAACAAACAAACTGTTGGGGTTGAACCCACCCACCAGATCCAAATCAATGGAATGGAGCTTATTATGGTTATGGACAAGGATATGATGCAGGTTATGGTTATGCACCACAACCTCAGGATCCCAATATGTACAGTTATGCCCCTTATGCATATGGAAATTATCAGCAGCAGTAACATTTACTTGGGTTCAGGCTCTTCTGTGGACGTGGAAATATGGGTTCATTCATAGAGCTGTCTCTGT

Ace file of the UniGene sp_v3.0_unigene76459

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative RNA binding protein [Oryza sativa Japonica Group] gb\|ABF97192.1\| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] dbj\|BAG95141.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	2.0e-08	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Nuclear acid binding protein, putative	-	-	2.835e-12	-

Source	Gene names
Sma3	B1099H05.42; GSVIVT00014762001; GSVIVT00027337001; LOC_Os03g37270; OSIGBa0148A10.8; OSJNBa0004B24.1; OSJNBb0060E08.6; Os03g0569900; Os04g0625800; Os08g0190200; OsI_12307; OsI_17488; OsI_17510; OsJ_11490; OsJ_16246; OsJ_26296; P0610E02.18; POPTRDRAFT_72711

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRZ2

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 80 - 418

Fln protein: QMLHGTVLGQQAIRLSWGRSPAxxxxCWG*THPPDPNQWNGAYYGYGQGYDAGYGYAPQPQDPNMYSYAPYAYGNYQQQ*

Protein Length: 81

Fln nts: GCAAATGCTACATGGTACAGTTCTTGGTCAGCAAGCCATTCGTCTTTCTTGGGGACGGAGTCCTGCAxxxxxxxxxxxxTGTTGGGGTTGAACCCACCCACCAGATCCAAATCAATGGAATGGAGCTTATTATGGTTATGGACAAGGATATGATGCAGGTTATGGTTATGCACCACAACCTCAGGATCCCAATATGTACAGTTATGCCCCTTATGCATATGGAAATTATCAGCAGCAGTAACATTTACTTGGGTTCAGGCTCTTCTGTGGACGTGGAAATATGGGTTCATTCATAGAGCTGTCTCTGT

Fln Alignment:

GD4IA4402D0MB9___QMLHGTVLGQQAIRLSWGRSPANKQxQTNCWG*THPPDPNQWNXXXXXXXXXXXXXXXXX-PQPQDPNMYSYAPYAYGNYQQQ
B8LRZ2_______________QMLHGTVLGQQAIRLSWGRSPANKQxQTPGWVQPQQPDPNQWNGAAYYGYGQGYDAGYGYAPQPQDPNMYSYAPYAYGNYQQQ

SSRs (tot: 1)

Start position	End position	Sequence	Length
66	78	CAAA CAAA CAAA C	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain