SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76391

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene76391
GTGGCGACAGAAGTATTGCGGCTTTTCTCTGATCTATACGAGACACCAAAATGACGGCACCAAGGGAGCGAACTTTCATCATGGCCAAGCCTGATGCTGTTCATCGTGGACTTGTTGGGGACATCATTAAACGATTTGAGCAGAAGGGATTCAAACTGGTTGCAATGAAGTTTATGTCGGCTTCGGAGGATCTCCTGAAAAAGCACTATGCCGATCTGAAGGAC

Ace file of the UniGene sp_v3.0_unigene76391

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleoside diphosphate kinase n=1 Tax=Ictalurus punctatus RepID=Q9DFC0_ICTPU	-	-	7.0e-18	75%
FL-Next	sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Nucleoside diphosphate kinase	-	-	1.995e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Nucleoside-diphosphate kinase.	EC:2.7.4.6	-	4.198e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	4.198e-15	%
Sma3	Pyrimidine metabolism	00240	4.198e-15	%
Sma3	Metabolic pathways	01100	4.198e-15	%
Sma3	Biosynthesis of secondary metabolites	01110	4.198e-15	%

Source	Gene names
Sma3	MICPUCDRAFT_60912; MICPUN_88956; NDK1; NDK2; NDKP1; NDPK1; PHATRDRAFT_42104; POPTRDRAFT_640355; THAPSDRAFT_12070; THAPSDRAFT_6290;

Source	GOs	Term	Type	Identity
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	nucleoside diphosphate kinase activity	GO:0004550	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	GTP biosynthetic process	GO:0006183	Biological Process	-
Sma3	UTP biosynthetic process	GO:0006228	Biological Process	-
Sma3	CTP biosynthetic process	GO:0006241	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside diphosphate kinase	IPR001564	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11010.1	NDPK3 nucleoside diphosphate kinase 3 chr4:6732780-6734298 REVERSE LENGTH=238	2.0e-16	56%
RefSeq	Arabidopsis thaliana	NP_192839.1	nucleoside diphosphate kinase III [Arabidopsis thaliana]	2.0e-16	56%
RefSeq	Populus trichocarpa	XP_002299472.1	predicted protein [Populus trichocarpa]	2.0e-16	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR88

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 96 aas, your sequence is shorter than subject: 74 - 235

Fln protein: GDRSIAAFL*SIRDTKMTAPRERTFIMAKPDAVHRGLVGDIIKRFEQKGFKLVAMKFMSASEDLLKKHYADLKD

Protein Length: 75

Fln nts: GTGGCGACAGAAGTATTGCGGCTTTTCTCTGATCTATACGAGACACCAAAATGACGGCACCAAGGGAGCGAACTTTCATCATGGCCAAGCCTGATGCTGTTCATCGTGGACTTGTTGGGGACATCATTAAACGATTTGAGCAGAAGGGATTCAAACTGGTTGCAATGAAGTTTATGTCGGCTTCGGAGGATCTCCTGAAAAAGCACTATGCCGATCTGAAGGAC

Fln Alignment:

GD4IA4402DECWG___APRERTFIMAKPDAVHRGLVGDIIKRFEQKGFKLVAMKFMSASEDLLKKHYADLKD
B8LR88_______________AELERTFIAIKPDGVQRGLISEIVSRFERKGYKLVAIKLVVPSKEFAEQHYYDLKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain