SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76350

Length: 370 nt

UniGene Fasta

>sp_v3.0_unigene76350
GCCACAAATAACTCTCGGGGAACAAGGTGTTGACTTGGTCCATCAATGCCGAGAGAAATACCCCTTGGACTCATTCCATCAAGCCCGGATACGGCTGTCAATAGCCTTCCCTGACAAACGATTGCTTCAATACGACTGTGGTAAACTGCAGAGACTAGATGCTCTCCTACGAGAATTGCAAGCCGGTGGTCATAGAGCCCTGATCTTTACGCAAATGACCAAAGTTCTAGATATTCTAGAGCAGTTCTTGAACATCCACGGTCACCGGTATTTACGACTAGATGGAGCCACGAAAGTGGAGCAGCGTCAAGCCCTCACCGATCGGTTCAACAATGATACCAGGATTCCAGTATTCATTCTGTCTACGCGT

Ace file of the UniGene sp_v3.0_unigene76350

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2 family DNA-dependent ATPase n=1 Tax=Aspergillus oryzae RIB40 RepID=Q2U236_ASPOR	-	-	7.00649e-45	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	SWR1 complex protein, SNF2 family DNA-dependent ATPase	-	-	1.003e-08	-

Source	Gene names
Sma3	At3g12810; CHLREDRAFT_101843; CHR1506; CHR1507; CHR1515; CHR1545; CHR922; CHR928; GSVIVT00025371001; MICPUCDRAFT_52710; MICPUCDRAFT_59573; MICPUN_104934; MICPUN_64845; OJ1743_B12.28; OSTLU_119553; Os02g0689800; OsI_08529; OsI_18430; OsJ_07989; Ot02g02550;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin remodeling complex	GO:0016585	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	HSA	IPR006562	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12810.1	PIE1, SRCAP, chr13 SNF2 domain-containing protein / helicase domain-containing protein chr3:4065636-4073992 FORWARD LENGTH=2055	5.0e-34	58%
RefSeq	Arabidopsis thaliana	NP_187887.3	helicase SWR1 [Arabidopsis thaliana]	6.0e-34	58%
RefSeq	Populus trichocarpa	XP_002303179.1	chromatin remodeling complex subunit [Populus trichocarpa]	4.0e-33	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 123 - 377

Fln protein: PQITLGEQGVDLVHQCREKYPLDSFHQARIRLSIAFPDKRLLQYDCGKLQRLDALLRELQAGGHRALIFTQMTKVLDILEQFLNIHGHRYLRLDGATKVEQRQALTDRFNNDTRIPVFILSTR

Protein Length: 124

Fln nts: GCCACAAATAACTCTCGGGGAACAAGGTGTTGACTTGGTCCATCAATGCCGAGAGAAATACCCCTTGGACTCATTCCATCAAGCCCGGATACGGCTGTCAATAGCCTTCCCTGACAAACGATTGCTTCAATACGACTGTGGTAAACTGCAGAGACTAGATGCTCTCCTACGAGAATTGCAAGCCGGTGGTCATAGAGCCCTGATCTTTACGCAAATGACCAAAGTTCTAGATATTCTAGAGCAGTTCTTGAACATCCACGGTCACCGGTATTTACGACTAGATGGAGCCACGAAAGTGGAGCAGCGTCAAGCCCTCACCGATCGGTTCAACAATGATACCAGGATTCCAGTATTCATTCTGTCTACGCGT

Fln Alignment:

GD4IA4402DLCLM___DLVHQCREKYPLDSFHQARIRLSIAFPDKRLLQYDCGKLQRLDALLRELQAGGHRALIFTQMTKVLDILEQFLNIHGHRYLRLDGATKVEQRQALTDRFNN-DTRIPVFILSTR
D5AD70_______________NLMLQLRKNFNHPDLLQSQFEISYHYPPVEKLMEQCGKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain