SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76348

Length: 282 nt

UniGene Fasta

>sp_v3.0_unigene76348
AAAATATCTTCAGCTCTGGCACAGGAGATGAGTTTCATCAATCATCACTCATGCTTTACTTTGTAACTATTTTTTCACTGGGACTCTTCACATATGGCCTTGCACTTCCAGCGGGTCTCTTCATACCCATAATTTTAATGGGTTCTGCATATGGCCGCTCTCTTGGAGAGCTGATTGGATCCTTCACAGACATTGATCAGGGGCTTTATGCTGTGCTTGGTGCAGCTTCCTTTCTTGGAGGCTCAATGAGGATGACAGTTTCCTTGTGTGTTATTCTTTTGG

Ace file of the UniGene sp_v3.0_unigene76348

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloride channel 1 n=1 Tax=Hordeum vulgare subsp. vulgare RepID=E9LFE6_HORVD	-	-	8.0e-30	65%
FL-Next	sp=Chloride channel protein CLC-b; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Sma3	Cl-channel clc-7	-	-	5.214e-20	-

Source	Gene names
Sma3	At3g27170; At5g26240; At5g33280; At5g40890; At5g49890; C1C-Nt1; CLC-A; CLC-B; CLC-C; CLC-D; F19N02.1; F9D12.10; GSVIVT00003626001; GSVIVT00006420001; GSVIVT00019950001; GSVIVT00035336001; GSVIVT00037838001; H0413E07.11; K9P8.3; LOC_Os03g48940; LOC_Os12g25

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	trans-Golgi network	GO:0005802	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	voltage-gated chloride channel activity	GO:0005247	Molecular Function	-
Sma3	chloride ion binding	GO:0031404	Molecular Function	-
Sma3	chloride transport	GO:0006821	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Chloride channel, voltage gated	IPR001807	-	-
Sma3	Chloride channel ClC-plant	IPR002251	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Chloride channel, core	IPR014743	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27170.1	CLC-B, ATCLC-B chloride channel B chr3:10024147-10026921 FORWARD LENGTH=780	6.0e-35	66%
RefSeq	Arabidopsis thaliana	NP_189353.1	chloride channel protein CLC-b [Arabidopsis thaliana]	7.0e-35	66%
RefSeq	Populus trichocarpa	XP_002331024.1	Cl-channel clc-7 [Populus trichocarpa]	3.0e-35	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92942

Fln msg: Distance to subject end: 248 aas, your sequence is shorter than subject: 93 - 780

Fln protein: NIFSSGTGDEFHQSSLMLYFVTIFSLGLFTYGLALPAGLFIPIILMGSAYGRSLGELIGSFTDIDQGLYAVLGAASFLGGSMRMTVSLCVILL

Protein Length: 94

Fln nts: AAAATATCTTCAGCTCTGGCACAGGAGATGAGTTTCATCAATCATCACTCATGCTTTACTTTGTAACTATTTTTTCACTGGGACTCTTCACATATGGCCTTGCACTTCCAGCGGGTCTCTTCATACCCATAATTTTAATGGGTTCTGCATATGGCCGCTCTCTTGGAGAGCTGATTGGATCCTTCACAGACATTGATCAGGGGCTTTATGCTGTGCTTGGTGCAGCTTCCTTTCTTGGAGGCTCAATGAGGATGACAGTTTCCTTGTGTGTTATTCTTTTGG

Fln Alignment:

GD4IA4402DAJ8V___NIFSSGTGDEFHQSSLMLYFVTIFSLGLFTYGLALPAGLFIPIILMGSAYGRSLGELIGSFTDIDQGLYAVLGAASFLGGSMRMTVSLCVILL
P92942_______________NLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLFLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain