SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76324

Length: 203 nt

UniGene Fasta

>sp_v3.0_unigene76324
TCAAGTACCTTGATCGACTTGCTCGCCAACGCAGAGTCCAAATGCCGAATTGAAGGGACTCGATGTAGGATACGACTGTACATCTCGCACGTCCAAGTGAACCCATGCGCCGAAAATGCGCCGACGGACGTACCGCGCCCACGGTCGAATCAACCCATTCATGAGCAACCCGAGTCACATCGAACTGATCCTGTCGCAGCAGG

Ace file of the UniGene sp_v3.0_unigene76324

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative 60S ribosomal protein RPL17 (Fragment) n=1 Tax=Flustra foliacea RepID=A9UDS6_9BILA	-	-	3.0e-10	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	60S ribosomal protein L17-2	-	-	1.165e-08	-

Source	Gene names
Sma3	At1g27400; At1g67430; B1279D09.8; F17L21.19; GSVIVT00002839001; GSVIVT00002840001; GSVIVT00017930001; Os09g0258600; OsI_30588; OsJ_28568; P0523B07.46; PETRP; PHYPADRAFT_122013; PHYPADRAFT_132604; PHYPADRAFT_152415; PHYPADRAFT_165821; PHYPADRAFT_177216; PO

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Ribosomal protein L22/L17, eukaryotic/archaeal	IPR005721	-	-
Sma3	Peptidase M28	IPR007484	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67430.1	Ribosomal protein L22p/L17e family protein chr1:25262209-25263627 FORWARD LENGTH=175	6.0e-15	64%
RefSeq	Arabidopsis thaliana	NP_176910.1	60S ribosomal protein L17-2 [Arabidopsis thaliana]	7.0e-15	64%
RefSeq	Populus trichocarpa	XP_002311713.1	predicted protein, partial [Populus trichocarpa]	2.0e-14	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYW9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 29 aas, your sequence is shorter than subject: 67 - 183

Fln protein: QVP*STCSPTQSPNAELKGLDVGYDCTSRTSK*THAPKMRRRTYRAHGRINPFMSNPSHIELILSQQ

Protein Length: 68

Fln nts: TCAAGTACCTTGATCGACTTGCTCGCCAACGCAGAGTCCAAATGCCGAATTGAAGGGACTCGATGTAGGATACGACTGTACATCTCGCACGTCCAAGTGAACCCATGCGCCGAAAATGCGCCGACGGACGTACCGCGCCCACGGTCGAATCAACCCATTCATGAGCAACCCGAGTCACATCGAACTGATCCTGTCGCAGCAGG

Fln Alignment:

GD4IA4402EW7D8___NAELKGLDVGYDCTSRTSK*THAPKMRRRTYRAHGRINPFMSNPSHIELILSQQ
A9NYW9_______________NAEVKGLDVDALYISHIQV-NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain