SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76254

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene76254
AGAAATAAGTGCTGATAAGGCAGATATATTTAGGAACATTGAGGGGATGGCTGCAGCTGCATTGCGATGCATTGCTTTTGCTTACAGGAAATATGATCTTGATAGTGTGCCTGATGAAGAGCAACGCCAATCATGGGAAATTCCTGAAGAGGATCTTACCCTTTTGGCAATAGTTGGTATAAAGGTAATGGGAAGATCCTCACCTACAGACAAACTTCTCTTGGTGCAAACACT

Ace file of the UniGene sp_v3.0_unigene76254

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=2 Tax=Hordeum vulgare RepID=F2E6C9_HORVD	-	-	1.0e-12	56%
FL-Next	sp=Calcium-transporting ATPase 10, plasma membrane-type; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%

Source	Gene names
Sma3	GSVIVT00025300001; POPTRDRAFT_765045;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29900.1	ACA10, CIF1, ATACA10 autoinhibited Ca(2+)-ATPase 10 chr4:14611225-14618775 REVERSE LENGTH=1069	2.0e-14	47%
RefSeq	Arabidopsis thaliana	NP_194719.1	Ca2+-transporting ATPase [Arabidopsis thaliana]	3.0e-14	47%
RefSeq	Populus trichocarpa	XP_002309001.1	autoinhibited calcium ATPase [Populus trichocarpa]	1.0e-16	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SZR1

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 77 - 1069

Fln protein: EISADKADIFRNIEGMAAAALRCIAFAYRKYDLDSVPDEEQRQSWEIPEEDLTLLAIVGIKVMGRSSPTDKLLLVQT

Protein Length: 78

Fln nts: AGAAATAAGTGCTGATAAGGCAGATATATTTAGGAACATTGAGGGGATGGCTGCAGCTGCATTGCGATGCATTGCTTTTGCTTACAGGAAATATGATCTTGATAGTGTGCCTGATGAAGAGCAACGCCAATCATGGGAAATTCCTGAAGAGGATCTTACCCTTTTGGCAATAGTTGGTATAAAGGTAATGGGAAGATCCTCACCTACAGACAAACTTCTCTTGGTGCAAACACT

Fln Alignment:

GD4IA4402C6RGQ___EISADKADIFRN-IEGMAAAALRCIAFAYRKYDLDSVP-DEEQRQSWEIPEEDLTLLAIVGIKVMGRSSPTDKLLLVQ
Q9SZR1_______________DMSEDKMGGLKDAIDDMAARSLRCVAIAFRTFEADKIPTDEEQLSRWELPEDDLILLAIVGIKDPCRPGVKNSVLLCQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain