SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76227

Length: 140 nt

UniGene Fasta

>sp_v3.0_unigene76227
AATTCCGCTTCCGCTATGCAATGTGCCGCCCTGCCTGGCCGCTTGGAGCTGGGAGGACGTGTTCCGTAAGTTCGACACCAATGGCGACGGCAAAATATCGAAATCGGAACTGAGCGCCATCCTTAAGNGCAGCTGTAGTG

Ace file of the UniGene sp_v3.0_unigene76227

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	7.0e-10	89%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	0.0	88%

Source	Gene names
Sma3	lp8;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O22429

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 45 aas, your sequence is shorter than subject: 47 - 166

Fln protein: NSASAMQCAALPGRLExxEDVFRKFDTNGDGKISKSELSAILKSSCS

Protein Length: 48

Fln nts: AATTCCGCTTCCGCTATGCAATGTGCCGCCCTGCCTGGCCGCTTGGAGCTxxxGGAGGACGTGTTCCGTAAGTTCGACACCAATGGCGACGGCAAAATATCGAAATCGGAACTGAGCGCCATCCTTAAGaGCAGCTGTAGTG

Fln Alignment:

GD4IA4402EA6EG___NSASAMQCAALPGRLELxEDVFRKFDTNGDGKISKSELSAILKSSCS
O22429_______________NSASAVQCATLPGRLELxEDVFRKFDTNGDGKISKSELSAILKCRSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain