SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76219

Length: 340 nt

UniGene Fasta

>sp_v3.0_unigene76219
GGGTAGTACTACCTATGTCTGGCCTCCTCAATGCATCCTTTGGGAATGCCGTAGAAATCATCGTCGGCCTTGCTGCTTTACTTAACGGTGAACTGCGCATTGTCCAGACGTCCATGCTTGGATCGATTTTGTCCAACATACTGCTCGTGCTCGGTTGTTCTTTTCTCGCTGGTGGATTGTATCACACAGAAGGAAAGTTTAATAGTACTGGGGCTCAGGCTTATGCTTCACTTCTGACGCTATCGGGCATCACGCTTGTTATCCCTGCGGCCTATGGAAGTACCACGGATGCTGGATTGCCCGGGCATGATTGCGCTGTTCCTGATGACGAAGGCAGATG

Ace file of the UniGene sp_v3.0_unigene76219

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calcium:hydrogen antiporter [Cryptococcus neoformans var. neoformans JEC21] ref\|XP_777289.1\| hypothetical protein CNBB2740 [Cryptococcus neoformans var. neoformans B-3501A] gb\|EAL22642.1\| hypothetical protein CNBB2740 [Cryptococcus neoformans var. neoform	-	-	1.0e-21	59%
FL-Next	sp=Vacuolar cation/proton exchanger 2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	54%
Sma3	Vacuolar cation/proton exchanger 2	-	-	1.114e-12	-

Source	Gene names
Sma3	CAX1; CAX2; CHLREDRAFT_105167; CHLREDRAFT_119334; LOC_Os03g27960; Os03g0397400; OsI_11919; PHATRDRAFT_11387; PHYPADRAFT_129850; PHYPADRAFT_172207; PHYPADRAFT_195687; PHYPADRAFT_204516; POPTRDRAFT_177604; POPTRDRAFT_270060; PutCAX1; RCOM_1211410; cax1;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cation transmembrane transporter activity	GO:0008324	Molecular Function	-
Sma3	cation transport	GO:0006812	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium/proton exchanger	IPR004713	-	-
Sma3	Calcium/proton exchanger superfamily	IPR004798	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13320.1	CAX2, atcax2 cation exchanger 2 chr3:4315418-4317997 FORWARD LENGTH=441	2.0e-18	47%
RefSeq	Arabidopsis thaliana	NP_566452.1	vacuolar cation/proton exchanger 2 [Arabidopsis thaliana]	3.0e-18	47%
RefSeq	Populus trichocarpa	XP_002330587.1	Ca2+ antiporter/cation exchanger, partial [Populus trichocarpa]	2.0e-21	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5KQN0

Fln msg: Distance to subject end: 200 aas, your sequence is shorter than subject: 112 - 437

Fln protein: VVLPMSGLLNASFGNAVEIIVGLAALLNGELRIVQTSMLGSILSNILLVLGCSFLAGGLYHTEGKFNSTGAQAYASLLTLSGITLVIPAAYGSTTDAGLPGHDCAVPDDEGR

Protein Length: 113

Fln nts: GGGTAGTACTACCTATGTCTGGCCTCCTCAATGCATCCTTTGGGAATGCCGTAGAAATCATCGTCGGCCTTGCTGCTTTACTTAACGGTGAACTGCGCATTGTCCAGACGTCCATGCTTGGATCGATTTTGTCCAACATACTGCTCGTGCTCGGTTGTTCTTTTCTCGCTGGTGGATTGTATCACACAGAAGGAAAGTTTAATAGTACTGGGGCTCAGGCTTATGCTTCACTTCTGACGCTATCGGGCATCACGCTTGTTATCCCTGCGGCCTATGGAAGTACCACGGATGCTGGATTGCCCGGGCATGATTGCGCTGTTCCTGATGACGAAGGCAGATG

Fln Alignment:

GD4IA4402DTGF0___MSGLLNASFGNAVEIIVGLAALLNGELRIVQTSMLGSILSNILLVLGCSFLAGGLYH--TEGKFNSTGAQAYASLLTLSGITLVIPA
Q5KQN0_______________IGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain