SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76169

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene76169
AGCTTTACCAAGTGGGCCATTGAGTATGATCAAGCGGCAGCAGAAGCATTCAAGCTCAATCACCCAGAGGCTGAGGTTTTCTGTCAGGTTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGCAAAGTAAGATGTGAGATGATATTGACATTTCTCTCATATGCTGATTATTTTCGGCCAAGATTCCTTTTACTGGAGAATGTCAGA

Ace file of the UniGene sp_v3.0_unigene76169

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytosine-specific methyltransferase n=1 Tax=Ricinus communis RepID=B9SPD5_RICCO	-	-	1.0e-15	41%
FL-Next	sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%
Sma3	Cytosine-specific methyltransferase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA (cytosine-5-)-methyltransferase.	EC:2.1.1.37	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cysteine and methionine metabolism	00270		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AT4g14140; ATHIM; At4g08990; At5g49160; BrMET1a; BrMET1b; DMT901; DMT902; GSVIVT00003628001; GSVIVT00003629001; GSVIVT00008336001; GSVIVT00026428001; GSVIVT00035341001; GSVIVT00035492001; GSVIVT00035508001; GSVIVT00035510001; K21P3.3; LOC_Os03g58400; MET1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA (cytosine-5-)-methyltransferase activity	GO:0003886	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	zygote asymmetric cytokinesis in embryo sac	GO:0010069	Biological Process	-
Sma3	maintenance of DNA methylation	GO:0010216	Biological Process	-
Sma3	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	DNA (cytosine-5)-methyltransferase 1, eukaryote	IPR017198	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49160.1	MET1, MET2, METI, DDM2, DMT01, DMT1 methyltransferase 1 chr5:19932501-19938186 FORWARD LENGTH=1534	5.0e-19	81%
RefSeq	Arabidopsis thaliana	NP_199727.1	DNA (cytosine-5)-methyltransferase 1 [Arabidopsis thaliana]	6.0e-19	81%
RefSeq	Populus trichocarpa	XP_002305346.1	DNA methyltransferase [Populus trichocarpa]	4.0e-19	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P34881

Fln msg: Distance to subject end: 293 aas, your sequence is shorter than subject: 71 - 1534

Fln protein: SFTKWAIEYDQAAAEAFKLNHPEAEVFCQVFSGMNRFNQRTWSKVRCEMILTFLSYADYFRPRFLLLENVR

Protein Length: 72

Fln nts: AGCTTTACCAAGTGGGCCATTGAGTATGATCAAGCGGCAGCAGAAGCATTCAAGCTCAATCACCCAGAGGCTGAGGTTTTCTGTCAGGTTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGCAAAGTAAGATGTGAGATGATATTGACATTTCTCTCATATGCTGATTATTTTCGGCCAAGATTCCTTTTACTGGAGAATGTCAGA

Fln Alignment:

GD4IA4402DTKN3___CQVFSGMNRFNQRTWSKVRCEMILTFLSYADYFRPRFLLLENVR
P34881_______________CQGFSGMNRFNQSSWSKVQCEMILAFLSFADYFRPRYFLLENVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain