SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76099

Length: 271 nt

UniGene Fasta

>sp_v3.0_unigene76099
TTGGCCTTTGGCCTGGACATGTACACCTATACTTGCAAGACAAAATGTAATTCCACCAGATTTCTCTTGGGGAGCATTGCATTTGCGGAGCCCCCCTCCATTCCCTACAGTTCTGAGGCATCTTCAGATTGTTGGGAAAAGTACTGGAGAAGAAACACTTGCACGATGGCCTACAAATATAGGCATGAAGTCTGTAGAGGAGGCTTTTGGTGATGTTTTGAAGTACCTGAACAATATCTGGGGAACAATTTCAAGTTCAGATATCTTGGAA

Ace file of the UniGene sp_v3.0_unigene76099

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SMC2_RICCO	-	-	2.0e-32	67%
FL-Next	tr=Protein binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	67%

Source	Gene names
Sma3	At5g23110; GSVIVT00030206001; H0103C06.6; OSJNBa0018M05.18; Os04g0675200; OsI_17903; OsJ_16607; PHYPADRAFT_129734; RCOM_0599950;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23110.1	Zinc finger, C3HC4 type (RING finger) family protein chr5:7758307-7775509 FORWARD LENGTH=4706	9.0e-29	52%
RefSeq	Arabidopsis thaliana	NP_197702.1	C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana]	1.0e-28	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SMC2

Fln msg: Distance to subject end: 598 aas, your sequence is shorter than subject: 90 - 4704

Fln protein: WPLAWTCTPILARQNVIPPDFSWGALHLRSPPPFPTVLRHLQIVGKSTGEETLARWPTNIGMKSVEEAFGDVLKYLNNIWGTISSSDILE

Protein Length: 91

Fln nts: TTGGCCTTTGGCCTGGACATGTACACCTATACTTGCAAGACAAAATGTAATTCCACCAGATTTCTCTTGGGGAGCATTGCATTTGCGGAGCCCCCCTCCATTCCCTACAGTTCTGAGGCATCTTCAGATTGTTGGGAAAAGTACTGGAGAAGAAACACTTGCACGATGGCCTACAAATATAGGCATGAAGTCTGTAGAGGAGGCTTTTGGTGATGTTTTGAAGTACCTGAACAATATCTGGGGAACAATTTCAAGTTCAGATATCTTGGAA

Fln Alignment:

GD4IA4402ESE8O___WPLAWTCTPILARQNVIPPDFSWGALHLRSPPPFPTVLRHLQIVGKSTGEETLARWPTNIGMKSVEEAFGDVLKYLNNIWGTISSSDI
B9SMC2_______________WPLAWSCSPILTRQNVIPPEFSWGALHLRSPPAFSTVLKHLEVVGRNGGEDTLAQWPTTPGVMTVDEAFCTVLRYLDRVWGSLSSSDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain