SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76069

Length: 401 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene76069
CAAGGCCGCTTAGGTCCAGGACGTATTCACCATTGTATGCGCTCGATAGGTGCCGCATCGCGGGCTCTGGATCTTATGATCCAGCGCGTCACGGACCCTACTCGAAAGACATTTGACAAGTTTCTTTACCAGCATGGTACGGTTGTTGCCGAAATTGCGCGGTCGCGGGCTGAGATCGAGTCTGCGCGACTTCTTGTGCTGAGCGCAGCGCTTCAAATCGACAAGCAACGGGCCAAGGGTGCGTTGAAGGAAATTGGCATTGCCAAGTTTGTTGTGCCTGCGATGGCGTGCGGAGTGGTCGATCGCGCTATGCAAGCATATGGTGCCGAGGGCTTGAGCCAGGACCAAGAACTCGCGAGCATGTATGCTCAACTGCGGACGCTGCGGTTGGCGGATGGACC

Ace file of the UniGene sp_v3.0_unigene76069 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	acyl-CoA dehydrogenase [Cryptococcus neoformans var. neoformans JEC21] ref\|XP_772951.1\| hypothetical protein CNBJ2270 [Cryptococcus neoformans var. neoformans B-3501A] gb\|EAL18304.1\| hypothetical protein CNBJ2270 [Cryptococcus neoformans var. neoformans B	-	-	0.0	74%
FL-Next	tr=Acetyl-coA dehydrogenase, putative; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%

Source	ECs	Term	Type	e value	Identity
Sma3	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	1.042e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	1.042e-08	%
Sma3	Valine, leucine and isoleucine degradation	00280	1.042e-08	%
Sma3	beta-Alanine metabolism	00410	1.042e-08	%
Sma3	Propanoate metabolism	00640	1.042e-08	%
Sma3	Metabolic pathways	01100	1.042e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.042e-08	%

Source	Gene names
Sma3	ACD2; At3g06800; At3g06810; CHLREDRAFT_118751; F3E22.5; GSVIVT00033039001; OSTLU_40224; Os07g0675000; OsI_27313; OsJ_25559; Ot01g00330; P0037D09.22-1; P0618H09.20-1; PHATRDRAFT_42907; PHYPADRAFT_120649; PHYPADRAFT_148260; POPTRDRAFT_597459; POPTRDRAFT_725

Source	GOs	Term	Type	Identity
Sma3	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3		IPR013764	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G06810.1	IBR3 acyl-CoA dehydrogenase-related chr3:2146534-2150654 FORWARD LENGTH=824	5.0e-37	53%
RefSeq	Arabidopsis thaliana	NP_187337.2	acyl-CoA dehydrogenase [Arabidopsis thaliana]	7.0e-37	53%
RefSeq	Populus trichocarpa	XP_002328597.1	predicted protein [Populus trichocarpa]	4.0e-36	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9M7Y7

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 133 - 423

Fln protein: QGRLGPGRIHHCMRSIGAASRALDLMIQRVTDPTRKTFDKFLYQHGTVVAEIARSRAEIESARLLVLSAALQIDKQRAKGALKEIGIAKFVVPAMACGVVDRAMQAYGAEGLSQDQELASMYAQLRTLRLADG

Protein Length: 134

Fln nts: CAAGGCCGCTTAGGTCCAGGACGTATTCACCATTGTATGCGCTCGATAGGTGCCGCATCGCGGGCTCTGGATCTTATGATCCAGCGCGTCACGGACCCTACTCGAAAGACATTTGACAAGTTTCTTTACCAGCATGGTACGGTTGTTGCCGAAATTGCGCGGTCGCGGGCTGAGATCGAGTCTGCGCGACTTCTTGTGCTGAGCGCAGCGCTTCAAATCGACAAGCAACGGGCCAAGGGTGCGTTGAAGGAAATTGGCATTGCCAAGTTTGTTGTGCCTGCGATGGCGTGCGGAGTGGTCGATCGCGCTATGCAAGCATATGGTGCCGAGGGCTTGAGCCAGGACCAAGAACTCGCGAGCATGTATGCTCAACTGCGGACGCTGCGGTTGGCGGATGGACC

Fln Alignment:

GD4IA4402C86T3___QGRLGPGRIHHCMRSIGAASRALDLMIQRVTDPTRKTFDKFLYQHGTVVAEIARSRAEIESARLLVLSAALQIDKQRAKGALKEIGIAKFVVPAMACGVVDRAMQAYGAEGLSQDQELASMYAQLRTLRLADG
Q9M7Y7_______________QGRLGPGRLHHCMRLIGAAERGMELMAQRAL--SRKTFGKFIAQHGSFVSDLAKLRVELEGTRLLVLEAADHLDKFGNKKARGILAMAKVAAPNMALKVLDTAIQVHGAAGVSSDTVLAHLWATARTLRIADG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain