SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76013

Length: 353 nt

UniGene Fasta

>sp_v3.0_unigene76013
CATGAGCGATAACGCTGAGTACAAAGAAGCCTTCGCCTTGTTTGACAAGAAAGGAACTGGTGCTATCCCTCGTGATGTCCTGGGCGATCTCTTGAGAGCTTTGGGACAAAACCCCACTCAGGCAGAGGTGGCCGACATTGTTTCAAAAGCGCCGAGGGAAGTTGACTATAAAAGCTTTTTGACGATCCTGAACCGAACAGATGGGTTCAAGCCCGCCGGTACCCCAGAGGAGTTTATCCGCGGATTCCAGGTGTTCGATAAGGAAGGAAATGGTTACATTGGTGCCGGAGAGTTGCGATATGTTCTCACCCAGCTCGGAGAGAAGATGACGGATGAGGAGGTTGATGAATTGC

Ace file of the UniGene sp_v3.0_unigene76013

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin regulatory light chain cdc4 n=6 Tax=Agaricomycetes RepID=A8NMY4_COPC7	-	-	0.0	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Calmodulin	-	-	2.137e-13	-

Source	Gene names
Sma3	At2g27030; At2g41110; At3g43810; At3g56800; CAL1; CALM1; CAM; CAM-1; CAM-11; CAM-16; CAM-2; CAM1; CAM1-1; CAM1-2; CAM1-3; CAM2; CAM3; CAM5; CAM53; CAM7; CAM72; CAM81; CAMF-1; CAMF1; CCM1; CHLREDRAFT_188144; CMD1; CaM; CaM-3; CaM1; CaM2; Cal; Cam; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G43810.1	CAM7 calmodulin 7 chr3:15664619-15666355 REVERSE LENGTH=149	5.0e-32	47%
RefSeq	Arabidopsis thaliana	NP_191239.1	calmodulin 3 [Arabidopsis thaliana]	6.0e-32	47%
RefSeq	Populus trichocarpa	XP_002317717.1	predicted protein [Populus trichocarpa]	3.0e-32	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRI1

Fln msg: Distance to subject end: 24 aas, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 117 - 149

Fln protein: MSDNAEYKEAFALFDKKGTGAIPRDVLGDLLRALGQNPTQAEVADIVSKAPREVDYKSFLTILNRTDGFKPAGTPEEFIRGFQVFDKEGNGYIGAGELRYVLTQLGEKMTDEEVDEL

Protein Length: 118

Fln nts: C_-_ATGAGCGATAACGCTGAGTACAAAGAAGCCTTCGCCTTGTTTGACAAGAAAGGAACTGGTGCTATCCCTCGTGATGTCCTGGGCGATCTCTTGAGAGCTTTGGGACAAAACCCCACTCAGGCAGAGGTGGCCGACATTGTTTCAAAAGCGCCGAGGGAAGTTGACTATAAAAGCTTTTTGACGATCCTGAACCGAACAGATGGGTTCAAGCCCGCCGGTACCCCAGAGGAGTTTATCCGCGGATTCCAGGTGTTCGATAAGGAAGGAAATGGTTACATTGGTGCCGGAGAGTTGCGATATGTTCTCACCCAGCTCGGAGAGAAGATGACGGATGAGGAGGTTGATGAATTGC

Fln Alignment:

GD4IA4402D2BFQ___AEYKEAFALFDKKGTGAIPRDVLGDLLRALGQNPTQAEVADIVSKAPRE----VDYKSFLTILNRTDGFKPAGTPEEFIRGFQVFDKEGNGYIGAGELRYVLTQLGEKMTDEEVDEL
A9NRI1_______________AEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARK--MKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain