SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75909

Length: 521 nt

UniGene Fasta

>sp_v3.0_unigene75909
AAATCCTGAGAAAGCACGAGAACCCGGGCTTGTCTACGATATCGGCACTGAAGATTACATTAACTATCTTTGCAGCTTGAACTATTCGTCTTCTGAGATTGGTATGCTGACAAAGACACGCGTTTCCTGTCCAAAGCAAATTCCGAAGCCGGGCGACCTCAATTATCCTTCTTTTTCGGTGGTGTTTTATTCCTCTGGCAAAGCCTCTGCTACTTTCACAAGAAAGGTCACCAATGTGGGGCCTCATAATTCAACTTACTCTGTACAAGTTGTGGAGCCGTTGGGAGTGAAGGTGACTGTGAAGCCCAAAACGTTGGTGTTCACGAAGAAGAATCAAAGTCATCTGTATACTGTAAGCTTTGGTGTTGAGAGGTCCTCTGCCTCTGGAGCTTATGGTTCGATCACTTGGTCGTCTGGTCTCTATACAGTTCGGAGCCCGGTCGCTGTTATATGGGTGGGTCGATCATTAAGCTTCCGGGATGATGACGTCCTTGTCGCTTAGATATTTAGATATTGTTTAG

Ace file of the UniGene sp_v3.0_unigene75909

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cucumisin-like serine protease [Oryza sativa Japonica Group] gb\|AAP53584.1\| Subtilisin N-terminal Region family protein, expressed [Oryza sativa Japonica Group]	-	-	9.0e-34	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Chromosome chr15 scaffold_37, whole genome shotgun sequence	-	-	2.14e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cucumisin.	EC:3.4.21.25	-	1.199e-10	-

Source	Gene names
Sma3	46C02.13; ARA12; ASP48; At1g01900; At1g04110; At2g05920; At5g67360; F20D22.12; F22M8.3; GSVIVT00000485001; GSVIVT00001034001; GSVIVT00001051001; GSVIVT00001055001; GSVIVT00026319001; GSVIVT00026320001; GSVIVT00026321001; GSVIVT00026322001; GSVIVT000263280

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	external side of plasma membrane	GO:0009897	Cellular Component	-
Sma3	extracellular matrix	GO:0031012	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	stomatal complex morphogenesis	GO:0010103	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-
Sma3	mucilage metabolic process involved seed coat development	GO:0048359	Biological Process	-
Sma3	mucilage extrusion from seed coat	GO:0080001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01900.1	ATSBT1.1, SBTI1.1 subtilase family protein chr1:310332-313011 FORWARD LENGTH=774	3.0e-36	45%
RefSeq	Arabidopsis thaliana	NP_563639.2	subtilase-like protein [Arabidopsis thaliana]	4.0e-36	45%
RefSeq	Populus trichocarpa	XP_002320086.1	predicted protein [Populus trichocarpa]	9.99995e-41	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE86

Fln msg: your sequence is shorter than subject: 167 - 394

Fln protein: NPEKAREPGLVYDIGTEDYINYLCSLNYSSSEIGMLTKTRVSCPKQIPKPGDLNYPSFSVVFYSSGKASATFTRKVTNVGPHNSTYSVQVVEPLGVKVTVKPKTLVFTKKNQSHLYTVSFGVERSSASGAYGSITWSSGLYTVRSPVAVIWVGRSLSFRDDDVLVA*

Protein Length: 168

Fln nts: AAATCCTGAGAAAGCACGAGAACCCGGGCTTGTCTACGATATCGGCACTGAAGATTACATTAACTATCTTTGCAGCTTGAACTATTCGTCTTCTGAGATTGGTATGCTGACAAAGACACGCGTTTCCTGTCCAAAGCAAATTCCGAAGCCGGGCGACCTCAATTATCCTTCTTTTTCGGTGGTGTTTTATTCCTCTGGCAAAGCCTCTGCTACTTTCACAAGAAAGGTCACCAATGTGGGGCCTCATAATTCAACTTACTCTGTACAAGTTGTGGAGCCGTTGGGAGTGAAGGTGACTGTGAAGCCCAAAACGTTGGTGTTCACGAAGAAGAATCAAAGTCATCTGTATACTGTAAGCTTTGGTGTTGAGAGGTCCTCTGCCTCTGGAGCTTATGGTTCGATCACTTGGTCGTCTGGTCTCTATACAGTTCGGAGCCCGGTCGCTGTTATATGGGTGGGTCGATCATTAAGCTTCCGGGATGATGACGTCCTTGTCGCTTAG___ATATTTAGATATTGTTTAG

Fln Alignment:

GD4IA4402DNMOG___NPEKAREPGLVYDIGTEDYINYLCSLNYSSSEIGMLTKTRVSCPKQIPKPGDLNYPSFSVVF--YSSGKASATFTRKVTNVGPHNSTYSVQVVEPL-GVKVTVKPKTLVFTKKNQSHLYTVSFGVER-----SSASGAYGSITWSSGLYTVRSPVAV
D5AE86_______________HPERAMDPGLIYDMGTEDYVRFLCSLNYTSKAIQVITRKPTRCPARRISPGNINYPSFSAVFDLTQPKKLSTVFFRTVTNVGPPLSVYRVRVIHPRGGVTVTVKPRKLVFTEKNQKLSYTVTVTTKHIDLLPGNADTRFCFISWTDGKHVVQSPITI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain