SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75880

Length: 258 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene75880
GATTTTATGTGACATCAATGGCAACTGCTGGAAATCAATGGGACAGTGGCTATCGAATAACTTCTATTGCTGCAACTCCTGATCAAGCTGCATTCATCCTGAGCAAGCCGAAAAAGAAATTGTCAAGTGAAGTACAGGAAACGCTTCGAACATCTGCTTTTCCCAGCACTCATGTAAAGGAAAAGTGGTCTAGGAATCTTTACATTTCTTTTGCTGTTGCATTTTGACAAGGAGATACCTGGAGGAGTGCACAACCTT

Ace file of the UniGene sp_v3.0_unigene75880 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative casein kinase [Arabidopsis thaliana]	-	-	5.0e-20	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Casein kinase, putative	-	-	1.792e-16	-

Source	Gene names
Sma3	At2g25750; At3g03940; At3g13670; At5g18190; CHLREDRAFT_153736; F20H23.1; GSVIVT00016758001; GSVIVT00024733001; GSVIVT00025476001; GSVIVT00032089001; GSVIVT00034324001; LOC_Os03g57940; MICPUCDRAFT_56718; MICPUN_82124; OSJNBa0014K08.8; OSJNBa0017O06.16; OSJ

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G18190.1	Protein kinase family protein chr5:6010215-6013724 REVERSE LENGTH=691	2.0e-25	53%
RefSeq	Arabidopsis thaliana	NP_197320.1	protein kinase-like protein [Arabidopsis thaliana]	3.0e-25	53%
RefSeq	Populus trichocarpa	XP_002298239.1	predicted protein [Populus trichocarpa]	3.0e-25	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A809

Fln msg: your sequence is shorter than subject: 75 - 260

Fln protein: FYVTSMATAGNQWDSGYRITSIAATPDQAAFILSKPKKKLSSEVQETLRTSAFPSTHVKEKWSRNLYISFAVAF*

Protein Length: 76

Fln nts: GATTTTATGTGACATCAATGGCAACTGCTGGAAATCAATGGGACAGTGGCTATCGAATAACTTCTATTGCTGCAACTCCTGATCAAGCTGCATTCATCCTGAGCAAGCCGAAAAAGAAATTGTCAAGTGAAGTACAGGAAACGCTTCGAACATCTGCTTTTCCCAGCACTCATGTAAAGGAAAAGTGGTCTAGGAATCTTTACATTTCTTTTGCTGTTGCATTTTGA___CAAGGAGATACCTGGAGGAGTGCACAACCTT

Fln Alignment:

GD4IA4402D952U___FYVTSMATAGNQW------------------------------DSGYRITSIAATPDQAAFILSKPKKKLSSEVQETLRTSAFPSTHVKEKWSRNLYIS
D5A809_______________FYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSAFPSTHVKEKWSKNLYIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain