SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75785

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene75785
GCTCTGCAGAGGCTTCCGGACTCAGTTGGGAACCTAGCAAGCCTCCAACATCTCGACTTGAGCGGGTGCCGCGCTCTGCAGACGCTTCCGGACTCGGTTCGGAACCTAGCAGGCCTCCAACGTCTCGACTTGAGCAGGTGCCGCGCTCTGCAGACGCTTCCGGTCTCGGTTCGGAACCTAGCAGGCCTCCAACATCTCGACTTGAGCTCGTGCTTCGCTCTGCAGGGGCTTCCGGTCTCGGTAGTAGAGCAGCTGCGCCAACGCCTAGGAGGACACTTTA

Ace file of the UniGene sp_v3.0_unigene75785

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J2_PINTA	-	-	8.0e-16	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	Gene names
Sma3	POPTRDRAFT_782912;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	1.0e-17	49%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	1.0e-17	49%
RefSeq	Populus trichocarpa	XP_002328452.1	predicted protein [Populus trichocarpa]	6.0e-17	52%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 93 - 1071

Fln protein: ALQRLPDSVGNLASLQHLDLSGCRALQTLPDSVRNLAGLQRLDLSRCRALQTLPVSVRNLAGLQHLDLSSCFALQGLPVSVVEQLRQRLGGHF

Protein Length: 94

Fln nts: GCTCTGCAGAGGCTTCCGGACTCAGTTGGGAACCTAGCAAGCCTCCAACATCTCGACTTGAGCGGGTGCCGCGCTCTGCAGACGCTTCCGGACTCGGTTCGGAACCTAGCAGGCCTCCAACGTCTCGACTTGAGCAGGTGCCGCGCTCTGCAGACGCTTCCGGTCTCGGTTCGGAACCTAGCAGGCCTCCAACATCTCGACTTGAGCTCGTGCTTCGCTCTGCAGGGGCTTCCGGTCTCGGTAGTAGAGCAGCTGCGCCAACGCCTAGGAGGACACTTTA

Fln Alignment:

GD4IA4402EMNDH___LQRLPDSVGNLASLQHLDLSGCRALQTLPDSVRNLAGLQRLDLSRCRALQTLPVSVRNLAGLQHLDLSSCFALQGLPVSV
C0PQE2_______________LQTLPDSVGNLTGLQTLDLIECSTLQTLPDSVGNLTGLQTLYLSRCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain