SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75747

Length: 383 nt

UniGene Fasta

>sp_v3.0_unigene75747
ATGCCTGATCGTTGCATTCGCTGAAAAAGCGCAAATGCCTCCTCGGCAAGCCCATGTTTGGAGTAACCTGTGATCATCACAGTCCATGAGCAGACATTTCGCTCAGGCATTTCCTCAAAAGCCCTGCGAGCATCCACCTTTTCTAGTATTCTCTCAGCTTGTTCCAACTTGGTAGCCCTGCAGCAGGGTATGGAAATCCATGAAAAAGTAAATAAGAGTGGATACGACTCCAATGTTGCTGTGGCCAATGCTCTTGTATACATGTATGCAAAATGTGGGTATATGGCGAAGGCACGCGATGTGTTTGACAAAATGCGTCAAAGAAATGTTATTTCATGGACAGCCATGATAGCAGGGTATGTTCAGAATGATTGTGGAGAGGA

Ace file of the UniGene sp_v3.0_unigene75747

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 43 n=1 Tax=Funaria hygrometrica RepID=F5CAD7_FUNHY	-	-	1.0e-19	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	cDNA clone:002-164-G08, full insert sequence	-	-	8.772e-06	-

Source	Gene names
Sma3	GSVIVT00015057001; OJ1359_D06.22; Os02g0106300; OsJ_05030; PHYPADRAFT_154890;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002307403.1	predicted protein [Populus trichocarpa]	6.0e-22	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 118 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 105 - 232

Fln protein: PVIITVHEQTFRSGISSKALRASTFSSILSACSNLVALQQGMEIHEKVNKSGYDSNVAVANALVYMYAKCGYMAKARDVFDKMRQRNVISWTAMIAGYVQNDCGE

Protein Length: 106

Fln nts: ATGCCTGATCGTTGCATTCGCTGAAAAAGCGCAAATGCCTCCTCGGCAAGCCCATGTTTGGAGTAACCTGTGATCATCACAGTCCATGAGCAGACATTTCGCTCAGGCATTTCCTCAAAAGCCCTGCGAGCATCCACCTTTTCTAGTATTCTCTCAGCTTGTTCCAACTTGGTAGCCCTGCAGCAGGGTATGGAAATCCATGAAAAAGTAAATAAGAGTGGATACGACTCCAATGTTGCTGTGGCCAATGCTCTTGTATACATGTATGCAAAATGTGGGTATATGGCGAAGGCACGCGATGTGTTTGACAAAATGCGTCAAAGAAATGTTATTTCATGGACAGCCATGATAGCAGGGTATGTTCAGAATGATTGTGGAGAGGA

Fln Alignment:

GD4IA4402EYBOI___ASTFSSILSACSNLVALQQGMEIHEKVNKSGYDSNVAVANALVYMYAKCGYMAKARDVFDKMRQRNVISWTAMIAGYVQNDCGE
D5AB53_______________AETFPSVLPACANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain