SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75728

Length: 399 nt

UniGene Fasta

>sp_v3.0_unigene75728
GTGCAGGCGTGTGCAGAACGTGGAGGGAAATTATCAAGGAGATTGTGAAACCGCCGCTTCTGTCCGGAGTGCTCACATTTCCTGTGTCCTTGAAGCAGCCTGGACCGAAAGAATATGCAGATGCAGTCCTATCTTGCTTGATAAAACATTGCACAGCATATTATTTGTACTTGGGTTTGGCTTCAACGATTTGTGAAAATGGGAAATTTCTTCTTGCTGCTCGAAAATTCAGAAAGGCTACAAGCACTGATTATGTCATCTCGTTTGATGGAGAGGATATGTCAAGGGGAAGCAATACCTACGTAGGAAAGCTGAGATCAAATTTTCTAGGAACCAAGTTCACAATATATGATAGTCAACCTTCTCATAGTGGTGGTGTAGCTACAAGTCATGCAGGGC

Ace file of the UniGene sp_v3.0_unigene75728

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA	-	-	4.99983e-42	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Tubby-like protein	-	-	5.539e-25	-

Source	Gene names
Sma3	AT2G18280; AT2G47900; At1g25280; At1g43640; At1g47270; At1g53320; At1g76900; At2g18280; At2g47900; At3g06380; At5g18680; B1131G08.31; F12M16.22; F17A22.29; F22K20.1; F24P17.15; F4F7.13; F7O12.7; F8G22.1; GSVIVT00014597001; GSVIVT00019826001; GSVIVT0002359

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47900.3	TLP3 tubby like protein 3 chr2:19611196-19612766 REVERSE LENGTH=407	59%
RefSeq	Arabidopsis thaliana	NP_001189775.1	Tubby-like F-box protein 3 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002314408.1	f-box family protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK95

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 132 - 418

Fln protein: AGVCRTWREIIKEIVKPPLLSGVLTFPVSLKQPGPKEYADAVLSCLIKHCTAYYLYLGLASTICENGKFLLAARKFRKATSTDYVISFDGEDMSRGSNTYVGKLRSNFLGTKFTIYDSQPSHSGGVATSHAG

Protein Length: 133

Fln nts: GTGCAGGCGTGTGCAGAACGTGGAGGGAAATTATCAAGGAGATTGTGAAACCGCCGCTTCTGTCCGGAGTGCTCACATTTCCTGTGTCCTTGAAGCAGCCTGGACCGAAAGAATATGCAGATGCAGTCCTATCTTGCTTGATAAAACATTGCACAGCATATTATTTGTACTTGGGTTTGGCTTCAACGATTTGTGAAAATGGGAAATTTCTTCTTGCTGCTCGAAAATTCAGAAAGGCTACAAGCACTGATTATGTCATCTCGTTTGATGGAGAGGATATGTCAAGGGGAAGCAATACCTACGTAGGAAAGCTGAGATCAAATTTTCTAGGAACCAAGTTCACAATATATGATAGTCAACCTTCTCATAGTGGTGGTGTAGCTACAAGTCATGCAGGGC

Fln Alignment:

GD4IA4402C6H9V___AGVCRTWREIIKEIVKPPLLSGVLTFPVSLKQPGPKEYADAVLSCLIKH---CTAYYLYLGLASTICENGKFLLAARKFRKATSTDYVISFDGEDMSRGSNTYVGKLRSNFLGTKFTIYDSQPSHSGGVATSHAG
B8LK95_______________ASVCRTWREIIKEIVKPPLLSGVLTFPVSLKQPGPK---DLPVQCFIKQDRTASAYYLYLGLTSTICENGKFLLAARKFRKATSTDYIISFNAEDMSRGSNTYVGKLRSNFLGTKFTIYDSYPPHSGGVATSHAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain