SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75657

Length: 361 nt

UniGene Fasta

>sp_v3.0_unigene75657
GACTACGAGGATCCCAAGGCAGTGACCGAGGACGACTCGAGCTCGTCACCTGCGGCTGCTTCATTTTTGTTGCCGAATCGAGCAGGGGAACAAATGGGGAATGGAATCAACGCTGTTTCTTCCCAGAACATTCCAACTCCCTCGGCGCAGCGCAAGCTGGCGTCGTCCCAATACAAGGGCGTGGTCGCGCAGCCCAACGGGCGTTGGGGTGCGCAAATATACGAGAAGCACCGGCGGGTGTGGCTCGGGACATTCAACTGCGAAGAAGACGCCGCCAAGGCCTACGACAGGGCCGCCATAATGCTTCGCGGTGCCGAAGCCATCACCAACTTCAACTTCGCCGACAGGAATCCGGAGACCT

Ace file of the UniGene sp_v3.0_unigene75657

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-binding protein RAV1, putative n=1 Tax=Ricinus communis RepID=B9SEJ0_RICCO	-	-	5.0e-22	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Putative AP2 domain containing protein RAP2.8	-	-	1.575e-08	-

Source	Gene names
Sma3	ARF14; At1g13260; At1g25560; At1g68840; At3g25730; F14K14.5; F2J7.3; GSVIVT00030292001; GSVIVT00038173001; K13N2.14; K13N2.7; Os01g0141000; Os01g0693400; Os05g0549800; OsI_00326; OsI_00328; OsI_00337; OsI_20876; OsJ_00312; OsJ_00314; P0034C09.44; P0480E02

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G25730.1	EDF3 ethylene response DNA binding factor 3 chr3:9396505-9397506 FORWARD LENGTH=333	1.0e-26	60%
RefSeq	Arabidopsis thaliana	NP_189201.1	AP2/ERF and B3 domain-containing transcription factor ARF14 [Arabidopsis thaliana]	1.0e-26	60%
RefSeq	Populus trichocarpa	XP_002311438.1	AP2 domain-containing transcription factor [Populus trichocarpa]	2.0e-27	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMA3

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 120 - 206

Fln protein: DYEDPKAVTEDDSSSSPAAASFLLPNRAGEQMGNGINAVSSQNIPTPSAQRKLASSQYKGVVAQPNGRWGAQIYEKHRRVWLGTFNCEEDAAKAYDRAAIMLRGAEAITNFNFADRNPET

Protein Length: 121

Fln nts: GACTACGAGGATCCCAAGGCAGTGACCGAGGACGACTCGAGCTCGTCACCTGCGGCTGCTTCATTTTTGTTGCCGAATCGAGCAGGGGAACAAATGGGGAATGGAATCAACGCTGTTTCTTCCCAGAACATTCCAACTCCCTCGGCGCAGCGCAAGCTGGCGTCGTCCCAATACAAGGGCGTGGTCGCGCAGCCCAACGGGCGTTGGGGTGCGCAAATATACGAGAAGCACCGGCGGGTGTGGCTCGGGACATTCAACTGCGAAGAAGACGCCGCCAAGGCCTACGACAGGGCCGCCATAATGCTTCGCGGTGCCGAAGCCATCACCAACTTCAACTTCGCCGACAGGAATCCGGAGACCT

Fln Alignment:

GD4IA4402C5JRK___SSQYKGVVAQPNGRWGAQIYE---KHRRVWLGTFNCEEDAAKAYDRAAIMLRGAEAITNFNFA
A9NMA3_______________ASHYRGVRRRPWGKFAAEIRDPAKKGARVWLGTFNTAEEAAHAYDRAAFRIRGARALVNFPLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain