SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75637

Length: 187 nt

UniGene Fasta

>sp_v3.0_unigene75637
TGCCTCTGGCAGCAAAATTTATGTTGGGAATTTGCCATGGCAGGCTGATGATAATAGCTTGTTGCAATTATTCAGCGAACATGGAAAGGTTTTGGAAGCAAGAGTAAGCCCGAAACGGGCGAGGTGATTGGTGTGTTCGAGAGCCTTCAGCCCTCCGACACCGATTTGGGCTCCAAGGCCCCCAAGG

Ace file of the UniGene sp_v3.0_unigene75637

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG	-	-	4.0e-08	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	OEE1	-	-	5.727e-31	-

Source	Gene names
Sma3	At3g50820; At5g66570; B1080D07.27; F18B3.100; GSVIVT00013467001; GSVIVT00014701001; K1F13.25; OEE1; OSJNBa0042B15.31; OSJNBa0070E11.5; Os01g0501800; Os09g0565200; OsI_02088; OsI_32419; OsJ_01921; OsJ_30367; POPTRDRAFT_716206; POPTRDRAFT_813989; PSBO; PSBO

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast thylakoid lumen	GO:0009543	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	poly(U) RNA binding	GO:0008266	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	photoinhibition	GO:0010205	Biological Process	-
Sma3	photosystem II assembly	GO:0010207	Biological Process	-
Sma3	regulation of protein dephosphorylation	GO:0035304	Biological Process	-
Sma3	photosystem II stabilization	GO:0042549	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Photosystem II PsbO, manganese-stabilising	IPR002628	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G50820.1	PSBO2, PSBO-2, OEC33 photosystem II subunit O-2 chr3:18891008-18892311 REVERSE LENGTH=331	8.0e-12	90%
RefSeq	Arabidopsis thaliana	NP_190651.1	oxygen-evolving enhancer protein 1-2 [Arabidopsis thaliana]	1.0e-11	90%
RefSeq	Populus trichocarpa	XP_002307234.1	hypothetical protein POPTRDRAFT_716206 [Populus trichocarpa]	1.0e-11	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWK5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 25 aas, your sequence is shorter than subject: 42 - 290

Fln protein: ASGSKIYVGNLPWQADDNSLLQLFSEHGKVLEARVSPKRAR*

Protein Length: 43

Fln nts: TGCCTCTGGCAGCAAAATTTATGTTGGGAATTTGCCATGGCAGGCTGATGATAATAGCTTGTTGCAATTATTCAGCGAACATGGAAAGGTTTTGGAAGCAAGAGTAAGCCCGAAACGGGCGAGGTGATTGGTGTGTTCGAGAGCCTTCAGCCCTCCGACACCGATTTGGGCTCCAAGGCCCCCAAGG

Fln Alignment:

GD4IA4402DJGD6___ASGSKIYVGNLPWQADDNSLLQLFSEHGKVLEARV
A9NWK5_______________SSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain