SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75636

Length: 480 nt

UniGene Fasta

>sp_v3.0_unigene75636
ATCTTGTCAAGCTACGCATGGTGTTTAGATTGCGCAAGGACAAATTCGAGAATATGGCAATAGCTGATAACAAACAGCGAGTGATGCCAACGGAGGACGATCGATCACCCGCAAGATGCCGGACACTCGCATATCCAGAAGCCGTGTTACTCACCAACCCAAAAACCCAGCCCTCAAGGGCGAGGTGGATGACAAATACCAGTATTCCCTGGATAACAAGGACGGTGGAGTATATGGATGGGTGAGTTTCGATCCCATGGTTGGCTTCTGGATTAATTTTCCAAGTCATGAATACCGAAATGGAGGCCCCACGAAGCAGAGCCTGACACTTCATGCTGGACCGATTTGCCTTGCTGTTTTCAACAGTGGTCATTACATGGGTGACAACTCATGCAAACTCCGCAATGGGGAGGCATGGCAGAAGGTTCTTGGTCCATTTTATGTGCACTTGAACTGTGCAAAAGAATATAGATCCATTCC

Ace file of the UniGene sp_v3.0_unigene75636

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb\|AEE28513.1\| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana]	-	-	2.0e-40	57%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	60%
Sma3	Lyase, putative	-	-	4.428e-23	-

Source	Gene names
Sma3	AT4g24430; AT4g37950; AT4g38030; At1g09880; At2g22620; At4g37950; At4g37960; At4g38030; F20D10.150; F20D10.70; F21M12.27; F21M12.30; GSVIVT00004034001; GSVIVT00010975001; GSVIVT00011094001; GSVIVT00011485001; GSVIVT00011489001; GSVIVT00013362001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR004348	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09890.1	Rhamnogalacturonate lyase family protein chr1:3214237-3217386 REVERSE LENGTH=617	8.00141e-43	56%
RefSeq	Arabidopsis thaliana	NP_172460.6	rhamnogalacturonate lyase-like protein [Arabidopsis thaliana]	1.00053e-42	56%
RefSeq	Populus trichocarpa	XP_002317123.1	predicted protein [Populus trichocarpa]	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HZ64

Fln msg: Overlapping hits, possible frame ERROR between 161 and 158, Distance to subject end: 351 aas, your sequence is shorter than subject: 159 - 650

Fln protein: LVKLRMVFRLRKDKFENMAIADNKQRVMPTEDDRSPARCRTLAYPEAVLLTxxxNPALKGEVDDKYQYSLDNKDGGVYGWVSFDPMVGFWINFPSHEYRNGGPTKQSLTLHAGPICLAVFNSGHYMGDNSCKLRNGEAWQKVLGPFYVHLNCAKEYRSI

Protein Length: 160

Fln nts: ATCTTGTCAAGCTACGCATGGTGTTTAGATTGCGCAAGGACAAATTCGAGAATATGGCAATAGCTGATAACAAACAGCGAGTGATGCCAACGGAGGACGATCGATCACCCGCAAGATGCCGGACACTCGCATATCCAGAAGCCGTGTTACTCACCxxxxxxxxxAACCCAGCCCTCAAGGGCGAGGTGGATGACAAATACCAGTATTCCCTGGATAACAAGGACGGTGGAGTATATGGATGGGTGAGTTTCGATCCCATGGTTGGCTTCTGGATTAATTTTCCAAGTCATGAATACCGAAATGGAGGCCCCACGAAGCAGAGCCTGACACTTCATGCTGGACCGATTTGCCTTGCTGTTTTCAACAGTGGTCATTACATGGGTGACAACTCATGCAAACTCCGCAATGGGGAGGCATGGCAGAAGGTTCTTGGTCCATTTTATGTGCACTTGAACTGTGCAAAAGAATATAGATCCATTCC

Fln Alignment:

GD4IA4402EXDRG___LVKLRMVFRLRKDKFENMAIADNKQRVMPTEDDRSPARCRTLAYPEAVLLTNxKNPALKGEVDDKYQYSLDNKDGGVYGWVSFDPMVGFWINFPSHEYRNGGPTKQSLTLHAGPICLAVFNSGHYMGDN-SCKLRNGEAWQKVLGPFYVHLN
B9HZ64_______________LVQTRMVFKLRRDKFHYMAISDEKQRVMPMPEDLLPGRGKQLIVPESVLLVNxINPDLKGEVDDKYQYSMDNKDGGVHGWIGSGPVIGFWVIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGDDIVAQFQEGEAWRKVFGPFFVYLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain