SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75598

Length: 250 nt

UniGene Fasta

>sp_v3.0_unigene75598
GTCCGGAAATATCTGTACATCGCCTTCAGTTCAGTTCGTTGGTTGTCAATCTTCAGTTCAAGGTCCAAATGGTGGCAAGAACAGGTGATCCTCCTAGAGGCAGTGCTGCAGCTGGATCTAGCAATAGCAGTGGCAGCAACATGCTGAGATTTTATACTGATGATGCTCCGGGACTTAAAATCACACCAACTGTGGTGTTAGTGATGAGCCTTGGATTCATTGGCTTTGTCACTGCTTTGCATGTGATTGG

Ace file of the UniGene sp_v3.0_unigene75598

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein transport protein SEC61 subunit beta [Arabidopsis thaliana] dbj\|BAB08229.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAC42746.1\| protein transport protein subunit - like [Arabidopsis thaliana] gb\|AAO63875.1\| putative protein transport pr	-	-	2.0e-10	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Protein transport protein Sec61 beta subunit	-	-	6.32e-08	-

Source	Gene names
Sma3	At3g60540; At3g60540/T8B10_200; At5g60460; At5g60460/muf9_110; GSVIVT00018216001; GSVIVT00022356001; GSVIVT00023543001; GSVIVT00024508001; LOC_Os11g01300; LOC_Os12g01260; MtrDRAFT_AC150891g13v2; Os12g0103300; OsJ_32647; PHYPADRAFT_29562; PHYPADRAFT_9587;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	shikimate 3-dehydrogenase (NADP+) activity	GO:0004764	Molecular Function	-
Sma3	glutamyl-tRNA reductase activity	GO:0008883	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	tetrapyrrole biosynthetic process	GO:0033014	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Preprotein translocase Sec, Sec61-beta subunit	IPR005609	-	-
Sma3	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	IPR006151	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal	IPR015895	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Preprotein translocase Sec, Sec61-beta subunit, eukarya	IPR016482	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60460.1	Preprotein translocase Sec, Sec61-beta subunit protein chr5:24317590-24317919 REVERSE LENGTH=109	1.0e-15	91%
RefSeq	Arabidopsis thaliana	NP_200854.1	protein transport protein SEC61 subunit beta [Arabidopsis thaliana]	2.0e-15	91%
RefSeq	Populus trichocarpa	XP_002314275.1	predicted protein, partial [Populus trichocarpa]	4.0e-15	88%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P109

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 82 - 122

Fln protein: PEISVHRLQFSSLVVNLQFKVQMVARTGDPPRGSAAAGSSNSSGSNMLRFYTDDAPGLKITPTVVLVMSLGFIGFVTALHVI

Protein Length: 83

Fln nts: GTCCGGAAATATCTGTACATCGCCTTCAGTTCAGTTCGTTGGTTGTCAATCTTCAGTTCAAGGTCCAAATGGTGGCAAGAACAGGTGATCCTCCTAGAGGCAGTGCTGCAGCTGGATCTAGCAATAGCAGTGGCAGCAACATGCTGAGATTTTATACTGATGATGCTCCGGGACTTAAAATCACACCAACTGTGGTGTTAGTGATGAGCCTTGGATTCATTGGCTTTGTCACTGCTTTGCATGTGATTGG

Fln Alignment:

GD4IA4402DUR7E___VHRLQFSSLVVNLQFKVQMVARTGDPPRXXXXXXXXXXXXXX---------------MLRFYTDDAPGLKITPTVVLVMSLGFIGFVTALHVI
A9P109_______________LHRISWLSLISS---SLKMVARTGDPPRGSAAAAGLRRRRMSGAGAGAGAGSSSGSNMLRFYTDDAPGLKITPTVVLVMSLGFIGFVTTLHVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain