SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75541

Length: 174 nt

UniGene Fasta

>sp_v3.0_unigene75541
ACGGGCATGGTCACGAGGGGCAACCAACCCCTGAAGAAGCTGAGCAACAGAAACACACGGGTTTGATGGGAAATCTTCACCGCACGAACAGTTCCAGCGCCAGCTCTGTAAGTCTCTCTTTCTTCCTAATTCTTTAATTCCTCACCCATCGCTTCCTTTCTTTATACTTCCATC

Ace file of the UniGene sp_v3.0_unigene75541

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydrin-like protein (Fragment) n=1 Tax=Picea abies RepID=A9XLN0_PICAB	-	-	4.0e-07	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Dehydrin-like protein	-	-	4.458e-22	-

Source	Gene names
Sma3	Dhn1; Dhn4; Dhn5; dhn-1; dhn-2; dhn9;

Source	GOs	Term	Type	e value	Identity
Sma3	response to stress	GO:0006950	Biological Process	0.0	-
Sma3	response to water	GO:0009415	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Dehydrin	IPR000167	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSG3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 53 aas, your sequence is shorter than subject: 45 - 166

Fln protein: GHGHEGQPTPEEAEQQKHTGLMGNLHRTNSSSASSVSLSFFLIL*

Protein Length: 46

Fln nts: ACGGGCATGGTCACGAGGGGCAACCAACCCCTGAAGAAGCTGAGCAACAGAAACACACGGGTTTGATGGGAAATCTTCACCGCACGAACAGTTCCAGCGCCAGCTCTGTAAGTCTCTCTTTCTTCCTAATTCTTTAATTCCTCACCCATCGCTTCCTTTCTTTATACTTCCATC

Fln Alignment:

GFIJCBT03FUYHN___GHGHEGQPTPEEAEQQKHTGLMGNLHRTN
A9NSG3_______________GHGHEGQITPEEAEQQKHTGLLGKLHRTH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain