SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75535

Length: 315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene75535
GGACAAGAACAAATACTCTAGTAGGTGCAATTTTGTCAAAGGTCATGCCGGCCACAGTATCAACAATAACGTCTTTTGCCAAAATGTTATTGTTGATACTGTGACCAAACAGAAGCAAGACCTGCTGAAGTTAAGCCCCAAGCATTTGCTCGAGCATCCCTTCTGACATGTTTAAAAGACGATCAGAGGAAAGGGGAGAGACTTTCACTTTCTCCCGGTGGTTGTTTGGCTGCTGTGACAGATTCACTTGGCCGTATTCTCCTGATAGATACACAAGCCCTTGTTGTTATAAAATTGTGGAAGGGTTATCGTGAT

Ace file of the UniGene sp_v3.0_unigene75535 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Similarity to rab3 GTPase-activating protein non-catalitic subunit	-	-	9.747e-06	-

Source	Gene names
Sma3	At3g14910; GSVIVT00027819001; OSJNBa0057D11.25-1; Os09g0315800; OsI_30840; OsJ_28835; PHYPADRAFT_182914; POPTRDRAFT_746463; RCOM_0105730;

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G14910.1	" unknown protein; Has 158 Blast hits to 158 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). chr3:5015432-5017566 FORWARD LENGTH=455"	2.0e-29	71%
RefSeq	Arabidopsis thaliana	NP_188109.1	uncharacterized protein [Arabidopsis thaliana]	2.0e-29	71%
RefSeq	Populus trichocarpa	XP_002331804.1	predicted protein [Populus trichocarpa]	2.0e-30	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABW7

Fln msg: Separated hits, possible frame ERROR between 86 and 103, Distance to subject end: 107 aas, your sequence is shorter than subject: 105 - 343

Fln protein: TRTNTLVGAILSKVMPATVSTITSFAKxxxxxxxDQTEARPAEVKPQAFARASLLTCLKDDQRKGERLSLSPGGCLAAVTDSLGRILLIDTQALVVIKLWKGYRD

Protein Length: 106

Fln nts: GGACAAGAACAAATACTCTAGTAGGTGCAATTTTGTCAAAGGTCATGCCGGCCACAGTATCAACAATAACGTCTTTTGCCAAAATxxxxxxxxxxxxxxxxxxTGACCAAACAGAAGCAAGACCTGCTGAAGTTAAGCCCCAAGCATTTGCTCGAGCATCCCTTCTGACATGTTTAAAAGACGATCAGAGGAAAGGGGAGAGACTTTCACTTTCTCCCGGTGGTTGTTTGGCTGCTGTGACAGATTCACTTGGCCGTATTCTCCTGATAGATACACAAGCCCTTGTTGTTATAAAATTGTGGAAGGGTTATCGTGAT

Fln Alignment:

GFIJCBT03GEBWA___RTNTLVGAILSKVMPATVSTITSFAKMxxxxxxDQTEARPAEVKPQAFARASLLTCLKDDQRKGERLSLSPGGCLAAVTDSLGRILLIDTQALVVIKLWKGYRD
D5ABW7_______________KNRSLVGAILSKVMPATVSTISSLAKMxxxxxxDQSEARPAEVKPQAFARASLLTCLKDDPRKGERLSLSPSGCLAAVTDSLGRILLIDTQALVVVRLWKGYRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain