SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75517

Length: 317 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene75517
GTATGTGCTTTGCCTTTGTTTTTTCCTTTTCCTTCACCTAGTTCAGGCGTGAGAATGGTTTCAGCTGTTAAATGTGTCGCCCTGAGCAGCCGCCGCGAGCTTGAGAACGTGTTCCGCAAGTTCGACACCAAGGGCGACGGAAAAATATCCAAGTCGGAACTGAGTTCCCTGATTACATTGGCGGAGATTGAAGGGGTGATGAAGGACGTGGACTCCAACAAAGACGGCTTCATCAACTTCCACGAGCTCCTGGAGGCCAACTCCAAGAACCCCAACGCCCCGGTCTCATGCGAGACTCCGCTTCAGCTGTGCAATAT

Ace file of the UniGene sp_v3.0_unigene75517 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	1.0e-23	85%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	0.0	64%

Source	Gene names
Sma3	lp8;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24620.1	EF hand calcium-binding protein family chr1:8723893-8724453 REVERSE LENGTH=186	2.0e-12	46%
RefSeq	Arabidopsis thaliana	NP_173866.1	putative calcium-binding protein CML25 [Arabidopsis thaliana]	3.0e-12	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: O22429

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 87 - 166

Fln protein: MVSAVKCVALSSRRELENVFRKFDTKGDGKISKSELSSLITLAEIEGVMKDVDSNKDGFINFHELLEANSKNPNAPVSCETPLQLCN

Protein Length: 88

Fln nts: GTATGTGCTTTGCCTTTGTTTTTTCCTTTTCCTTCACCTAGTTCAGGCGTGAGA_-_ATGGTTTCAGCTGTTAAATGTGTCGCCCTGAGCAGCCGCCGCGAGCTTGAGAACGTGTTCCGCAAGTTCGACACCAAGGGCGACGGAAAAATATCCAAGTCGGAACTGAGTTCCCTGATTACATTGGCGGAGATTGAAGGGGTGATGAAGGACGTGGACTCCAACAAAGACGGCTTCATCAACTTCCACGAGCTCCTGGAGGCCAACTCCAAGAACCCCAACGCCCCGGTCTCATGCGAGACTCCGCTTCAGCTGTGCAATAT

Fln Alignment:

GFIJCBT03GABCM___SAVKCVALSSRRELENVFRKFDTKGDGKISKSELSSLI----TLAEIEGVMKDVDSNKDGFINFHELLEANSKNPNA
O22429_______________SAVQCATLPGRLELEDVFRKFDTNGDGKISKSELSAILKCRSSEEEIDGVMKDVDSNKDGFISFDEFVAANSNGLNA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain