SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75514

Length: 320 nt

UniGene Fasta

>sp_v3.0_unigene75514
ATTTTTAGACAGAGTATGGGATCACTTTGTAGCAAGCAAAGGCCTGCAGCTGAAGAAGAACGTCAGGCTGAAGAAATAGATAGAAGAATTGCTCAAGAAGCAAGGGCAGAGAAGGATGTCCAAAAGCTATTATTACTTGGTGCTGGAGAGTCTGGAAAGTCTACAATTTTTAAACAAATAAAGCTTTTGTTTCAAACAGGCTTTGATGAAGCGGAGCGAGGGAACTACATATCAGTGATCCACGCAAACGCCTATCAGTCAATTAAAATATTATATGATGGTTCAAAGGACTTGCTGAAAGTGAAGGAGAGTTTTCAAAA

Ace file of the UniGene sp_v3.0_unigene75514

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP-binding protein G alpha subunit n=1 Tax=Daucus carota RepID=A1E287_DAUCA	-	-	4.0e-23	60%
FL-Next	sp=Guanine nucleotide-binding protein alpha-1 subunit; Solanum tuberosum (Potato).	-	-	0.0	80%
Sma3	Guanine nucleotide-binding protein alpha-1 subunit	-	-	7.668e-30	-

Source	Gene names
Sma3	At2g26300; D1; GA1; GA2; GPA1; GPA2; GSVIVT00032290001; HG1; HG2; NtGA1; NtGA1s; NtGA2; NtGA2t; OJ1116_F05.2; Os05g0341300; OsI_018808; OsI_19519; OsJ_18121; POPTRDRAFT_736941; POPTRDRAFT_763163; PlGPA1; PlGPA2; RCOM_0707670; RGA1; SOGA1; T1D16.6; TaGA1;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	heterotrimeric G-protein complex	GO:0005834	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	channel regulator activity	GO:0016247	Molecular Function	-
Sma3	G-protein signaling, coupled to S1P second messenger (sphingosine kinase activating)	GO:0001789	Biological Process	-
Sma3	protein ADP-ribosylation	GO:0006471	Biological Process	-
Sma3	oxygen and reactive oxygen species metabolic process	GO:0006800	Biological Process	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	response to glucose stimulus	GO:0009749	Biological Process	-
Sma3	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Guanine nucleotide binding protein (G-protein), alpha subunit	IPR001019	-	-
Sma3	Plant G-protein, alpha subunit	IPR002976	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	G protein alpha subunit, helical insertion	IPR011025	-	-
Sma3		IPR013753	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26300.1	GPA1, GP ALPHA 1, ATGPA1 G protein alpha subunit 1 chr2:11198087-11200822 FORWARD LENGTH=383	6.0e-28	75%
RefSeq	Arabidopsis thaliana	NP_180198.1	guanine nucleotide-binding protein alpha-1 subunit [Arabidopsis thaliana]	8.0e-28	75%
RefSeq	Populus trichocarpa	XP_002308517.1	predicted protein [Populus trichocarpa]	3.0e-29	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P93564

Fln msg: Distance to subject end: 278 aas, your sequence is shorter than subject: 101 - 384

Fln protein: MGSLCSKQRPAAEEERQAEEIDRRIAQEARAEKDVQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAERGNYISVIHANAYQSIKILYDGSKDLLKVKESFQ

Protein Length: 102

Fln nts: ATTTTTAGACAGAGT_-_ATGGGATCACTTTGTAGCAAGCAAAGGCCTGCAGCTGAAGAAGAACGTCAGGCTGAAGAAATAGATAGAAGAATTGCTCAAGAAGCAAGGGCAGAGAAGGATGTCCAAAAGCTATTATTACTTGGTGCTGGAGAGTCTGGAAAGTCTACAATTTTTAAACAAATAAAGCTTTTGTTTCAAACAGGCTTTGATGAAGCGGAGCGAGGGAACTACATATCAGTGATCCACGCAAACGCCTATCAGTCAATTAAAATATTATATGATGGTTCAAAGGACTTGCTGAAAGTGAAGGAGAGTTTTCAAAA

Fln Alignment:

GFIJCBT03F6P3V___QEARAEKDVQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAERGNYISVIHANAYQSIKILYDGSKDL
P93564_______________QETKADKHIQKLLLLGAGDSGKSTIFKQIKLLFQTGFDEAELKNYIPVIHANVYQTIKILHDGSKEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain