SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75412

Length: 311 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene75412
AAGTGAGGATAATGGGAGCAAATGCAGATAGCCAAGATCAGGAAAAGACTATTGTGATGCTTGACTTGGTGCCACTTGGAGAAAAATTTGACAATACAACTGCTTTCTTGATTTTTGAGAGATTTTGGCAAAAGAAGGTTATCATTAATGGGACCCTTTTTGGCGATTATTGGGTAATCTTTGTCTATTACCCAGGGCTTCCCCCACCACCGCCTTCTGCGTTTTCAAATGCAAACATTGATGGAGAGCCTACAAACAGCAATGGCCCTGGCAAACATGAGCCTCTTGGAGTTGATATCAATAAGCGGGGC

Ace file of the UniGene sp_v3.0_unigene75412 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase [Medicago truncatula]	-	-	7.0e-23	55%
FL-Next	sp=Receptor-like serine/threonine-protein kinase ALE2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%

Source	Gene names
Sma3	At2g20300; GSVIVT00016557001; GSVIVT00034175001; MpRLK17; MtrDRAFT_AC160012g37v2; OSJNBa0043L24.25; OSJNBb0065L13.2; Os01g0709500; OsI_03465; OsI_16593; OsJ_03209; P0456F08.11-1; PHYPADRAFT_41193; POPTRDRAFT_1111162; POPTRDRAFT_775451; POPTRDRAFT_785335;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G56890.1	Protein kinase superfamily protein chr5:23010801-23015559 REVERSE LENGTH=1113	4.0e-25	54%
RefSeq	Arabidopsis thaliana	NP_680446.1	protein kinase family protein [Arabidopsis thaliana]	5.0e-25	54%
RefSeq	Populus trichocarpa	XP_002330493.1	predicted protein [Populus trichocarpa]	5.0e-27	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RWW0

Fln msg: Distance to subject end: 490 aas, your sequence is shorter than subject: 103 - 744

Fln protein: VRIMGANADSQDQEKTIVMLDLVPLGEKFDNTTAFLIFERFWQKKVIINGTLFGDYWVIFVYYPGLPPPPPSAFSNANIDGEPTNSNGPGKHEPLGVDINKRG

Protein Length: 104

Fln nts: AAGTGAGGATAATGGGAGCAAATGCAGATAGCCAAGATCAGGAAAAGACTATTGTGATGCTTGACTTGGTGCCACTTGGAGAAAAATTTGACAATACAACTGCTTTCTTGATTTTTGAGAGATTTTGGCAAAAGAAGGTTATCATTAATGGGACCCTTTTTGGCGATTATTGGGTAATCTTTGTCTATTACCCAGGGCTTCCCCCACCACCGCCTTCTGCGTTTTCAAATGCAAACATTGATGGAGAGCCTACAAACAGCAATGGCCCTGGCAAACATGAGCCTCTTGGAGTTGATATCAATAAGCGGGGC

Fln Alignment:

GFIJCBT03GUHRL___VRIMGANADSQDQEKTIVMLDLVPLGEKFDNTTAFLIFERFWQKKVIINGTLFGDYWVIFVYYPGLXXXXPSAFSNANIDGE
Q8RWW0_______________VKIMGASADSENQGKTVVDINLVPLGEKFDNTTATLIYQRFRHKKVPLNETVFGDYEVTHISYPGI----PSSSPNGDVTGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain