SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75350

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene75350
TGCCACACCATATGTGACTCTCTCAAACATTTACGCAGCAGTTGGCAGGTGGGGTGACATTGAAAAGGTGAGAAGAATGATGAAAGATAGAGGCATAGAAAAGACACCTGGATGTAGTTGGATTGAGATCAATAAACNGATGCACACTTTCCTCGTAGGAGATATATCAGGTCCACAAACTCTATCTGAATTGGCCTGTTGATCTAATGCTGATTAATATGGATCACTTA

Ace file of the UniGene sp_v3.0_unigene75350

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa Japonica Group] dbj\|BAD30928.1\| pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa Japonica Group]	-	-	8.0e-14	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Pentatricopeptide repeat protein	-	-	1.712e-09	-

Source	Gene names
Sma3	Os07g0662700; OsI_27217; OsJ_25464; P0453E03.118; POPTRDRAFT_293986; PPR;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G03880.1	REME1 Pentatricopeptide repeat (PPR) superfamily protein chr2:1181560-1183452 FORWARD LENGTH=630	4.0e-18	55%
RefSeq	Arabidopsis thaliana	NP_178481.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-18	55%
RefSeq	Populus trichocarpa	XP_002302000.1	predicted protein [Populus trichocarpa]	4.0e-19	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 94 aas, your sequence is shorter than subject: 67 - 246

Fln protein: ATPYVTLSNIYAAVGRWGDIEKVRRMMKDRGIEKTPGCSWIEINKQMHTFLVGDISGPQTLSELAC*

Protein Length: 68

Fln nts: TGCCACACCATATGTGACTCTCTCAAACATTTACGCAGCAGTTGGCAGGTGGGGTGACATTGAAAAGGTGAGAAGAATGATGAAAGATAGAGGCATAGAAAAGACACCTGGATGTAGTTGGATTGAGATCAATAAACaGATGCACACTTTCCTCGTAGGAGATATATCAGGTCCACAAACTCTATCTGAATTGGCCTGTTGATCTAATGCTGATTAATATGGATCACTTA

Fln Alignment:

GFIJCBT03GB29W___ATPYVTLSNIYAAVGRWGDIEKVRRMMKDRGIEKTPGCSWIEINKQMHTFLVGDISGPQT
D5AAE0_______________AAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain