SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75320

Length: 93 nt

UniGene Fasta

>sp_v3.0_unigene75320
AGAAGAACTCTTCCTGCTTACAACGAGAAGGATGCATTGCTTGAAGCCGTGGCAAGGAATCAGGTTATTGTTGTATCTGGGGAGACTGGCTGT

Ace file of the UniGene sp_v3.0_unigene75320

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH	-	-	9.0e-07	80%
FL-Next	tr=Putative uncharacterized protein F11I4_16; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	80%

Source	Gene names
Sma3	F11I4_16; POPTRDRAFT_824579;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G48650.2	DEA(D/H)-box RNA helicase family protein chr1:17989517-17995169 REVERSE LENGTH=1206	6.0e-11	80%
RefSeq	Arabidopsis thaliana	NP_175298.2	DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]	7.0e-11	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9C734

Fln msg: Distance to subject end: 871 aas, your sequence is shorter than subject: 31 - 1167

Fln protein: RRTLPAYNEKDALLEAVARNQVIVVSGETGC

Protein Length: 32

Fln nts: AGAAGAACTCTTCCTGCTTACAACGAGAAGGATGCATTGCTTGAAGCCGTGGCAAGGAATCAGGTTATTGTTGTATCTGGGGAGACTGGCTGT

Fln Alignment:

GFIJCBT03F1GBX___RRTLPAYNEKDALLEAVARNQVIVVSGETGC
Q9C734_______________RKTLPAYKEKDALLKAIAANQVVVVSGETGC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain