SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75312

Length: 167 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene75312
TTTTGATTCTATGAGTCGAGATCACTGCATTGCACCAAAAGTGCAACATTATGCTTGTATGGTTGACCTTCTTGGTCGTGCTGGATGCCTGAATGAGGCCTATGATTTAATTAAGAAGATGCCCTTTGATCCTGATGCTGCTGTGTGGGGAGCCTTGCTTGCTGGTT

Ace file of the UniGene sp_v3.0_unigene75312 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LNU6.2\|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230 gb\|AEE29953.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	3.0e-14	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	Gene names
Sma3	At1g20230; At2g01510; At2g36730; At4g02750; At4g16835; At4g21300; At4g22765; At5g08510; At5g59600; B1032F05.19; DYW10; F13K3.13; F2I9.13; F2O15.13; F8L15.21; FCAALL.441; GSVIVT00002068001; GSVIVT00002920001; GSVIVT00006973001; GSVIVT00008660001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20230.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:7009570-7011852 FORWARD LENGTH=760	4.0e-19	66%
RefSeq	Arabidopsis thaliana	NP_173449.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	6.0e-19	66%
RefSeq	Populus trichocarpa	XP_002311156.1	predicted protein [Populus trichocarpa]	7.0e-20	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 194 aas, your sequence is shorter than subject: 55 - 370

Fln protein: FDSMSRDHCIAPKVQHYACMVDLLGRAGCLNEAYDLIKKMPFDPDAAVWGALLAG

Protein Length: 56

Fln nts: TTTTGATTCTATGAGTCGAGATCACTGCATTGCACCAAAAGTGCAACATTATGCTTGTATGGTTGACCTTCTTGGTCGTGCTGGATGCCTGAATGAGGCCTATGATTTAATTAAGAAGATGCCCTTTGATCCTGATGCTGCTGTGTGGGGAGCCTTGCTTGCTGGTT

Fln Alignment:

GFIJCBT03G93GH___FDSMSRDHCIAPKVQHYACMVDLLGRAGCLNEAYDLIKKMPFDPDAAVWGALL
A9P0W0_______________FDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain