SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75298

Length: 374 nt

UniGene Fasta

>sp_v3.0_unigene75298
GGAGGAGATGAGCATCCCACTGAAAGAACTTATCGAGCGACATTGCGGAGGTGTCAGAGGTGGCTGGGATAATTTACTTGGTATCATTCCTGGTGGAAGCTCCGTCCCAGTCCTGCCCATCGACAAGTGCTCGGAAGTTCTGATGGACTATGATTCTTTGAAGGATGCGCAGTCGGGTCTTGGGACGGGTGCCGTTATCGTAATGGACAAGAGCACAGATATCGTATCTGCCATTGCGCGGTTCTCTTCATTCTACAAACATGAGTCTTGCGGGCAGTGTACGCCCTGCCGAGAGGGCACGACGTGGATGATGAACATGATGAATCGTATGGTGGAAGGCCGCGCTCATAGACGTGAGATTGATATGCTCCTTG

Ace file of the UniGene sp_v3.0_unigene75298

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea okayama7#130] gb\|EAU80928.1\| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea okayama7#130]	-	-	0.0	84%
FL-Next	sp=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%

Source	Gene names
Sma3	At5g08530; CHLREDRAFT_186342; GSVIVT00025731001; MICPUCDRAFT_26689; MICPUN_94594; NUO6; OSTLU_43184; Os07g0645400; OsI_27090; OsJ_25349; Ot15g00500; P0503D09.102; PHATR_43944; PHYPADRAFT_115387; PHYPADRAFT_146618; POPTRDRAFT_821834; POPTRDRAFT_947397; RCO

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	respiratory chain complex I	GO:0045271	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity, acting on NADH or NADPH	GO:0016651	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site	IPR001949	-	-
Sma3	NADH ubiquinone oxidoreductase, F subunit	IPR011537	-	-
Sma3	NADH:ubiquinone oxidoreductase, 51kDa subunit	IPR011538	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G08530.1	CI51 51 kDa subunit of complex I chr5:2759848-2761726 REVERSE LENGTH=486	76%
RefSeq	Arabidopsis thaliana	NP_196470.1	NADH dehydrogenase (ubiquinone) flavoprotein 1 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002315622.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FNN5

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 124 - 486

Fln protein: EEMSIPLKELIERHCGGVRGGWDNLLGIIPGGSSVPVLPIDKCSEVLMDYDSLKDAQSGLGTGAVIVMDKSTDIVSAIARFSSFYKHESCGQCTPCREGTTWMMNMMNRMVEGRAHRREIDMLL

Protein Length: 125

Fln nts: GGAGGAGATGAGCATCCCACTGAAAGAACTTATCGAGCGACATTGCGGAGGTGTCAGAGGTGGCTGGGATAATTTACTTGGTATCATTCCTGGTGGAAGCTCCGTCCCAGTCCTGCCCATCGACAAGTGCTCGGAAGTTCTGATGGACTATGATTCTTTGAAGGATGCGCAGTCGGGTCTTGGGACGGGTGCCGTTATCGTAATGGACAAGAGCACAGATATCGTATCTGCCATTGCGCGGTTCTCTTCATTCTACAAACATGAGTCTTGCGGGCAGTGTACGCCCTGCCGAGAGGGCACGACGTGGATGATGAACATGATGAATCGTATGGTGGAAGGCCGCGCTCATAGACGTGAGATTGATATGCTCCTTG

Fln Alignment:

GFIJCBT03HGLXH___EEMSIPLKELIERHCGGVRGGWDNLLGIIPGGSSVPVLPIDKCSEVLMDYDSLKDAQSGLGTGAVIVMDKSTDIVSAIARFSSFYKHESCGQCTPCREGTTWMMNMMNRMVEGRAHRREIDML
Q9FNN5_______________EEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain