SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75289

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene75289
GACAATGAAACAACAACTTGTGCATCACACAAGTAATGGTTGTAACATAAACCCAGGCGATTTACTAGGATCTGGAACAATTTCTGGTTCGGATCCAAATTCTTATGGTTCCCTTCTGGAGTTATCTTGGCGAGGACAAAATCCTATAAAACTAGAGGGCACAGATATTACTAGAACGTTTTTGAAAGATGGTGACGAAATTACTTTAAAAGGTTATTGACG

Ace file of the UniGene sp_v3.0_unigene75289

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fumarylacetoacetase n=1 Tax=Osmerus mordax RepID=C1BJG5_OSMMO	-	-	7.0e-23	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Fumarylacetoacetase	-	-	6.229e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Fumarylacetoacetase.	EC:3.7.1.2	-	2.076e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Tyrosine metabolism	00350	2.076e-09	%
Sma3	Styrene degradation	00643	2.076e-09	%
Sma3	Metabolic pathways	01100	2.076e-09	%

Source	Gene names
Sma3	At1g12050; F12F1.8; GSVIVT00010893001; MtrDRAFT_AC150798g15v2; PHATRDRAFT_50281; PHYPADRAFT_137922; PHYPADRAFT_190260; POPTRDRAFT_652386; RCOM_0670030; THAPSDRAFT_33724; VITISV_033628;

Source	GOs	Term	Type	e value	Identity
Sma3	fumarylacetoacetase activity	GO:0004334	Molecular Function	0.0	-
Sma3	aromatic amino acid family metabolic process	GO:0009072	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarylacetoacetase, C-terminal	IPR002529	-	-
Sma3	Fumarylacetoacetase	IPR005959	-	-
Sma3	Fumarylacetoacetase, C-terminal-related	IPR011234	-	-
Sma3	Fumarylacetoacetase, N-terminal	IPR015377	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12050.1	fumarylacetoacetase, putative chr1:4072904-4075856 FORWARD LENGTH=421	8.0e-28	64%
RefSeq	Arabidopsis thaliana	NP_172669.2	fumarylacetoacetase [Arabidopsis thaliana]	1.0e-27	64%
RefSeq	Populus trichocarpa	XP_002307870.1	predicted protein [Populus trichocarpa]	2.0e-26	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABT0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 20 aas, your sequence is shorter than subject: 73 - 424

Fln protein: TMKQQLVHHTSNGCNINPGDLLGSGTISGSDPNSYGSLLELSWRGQNPIKLEGTDITRTFLKDGDEITLKGY*

Protein Length: 74

Fln nts: GACAATGAAACAACAACTTGTGCATCACACAAGTAATGGTTGTAACATAAACCCAGGCGATTTACTAGGATCTGGAACAATTTCTGGTTCGGATCCAAATTCTTATGGTTCCCTTCTGGAGTTATCTTGGCGAGGACAAAATCCTATAAAACTAGAGGGCACAGATATTACTAGAACGTTTTTGAAAGATGGTGACGAAATTACTTTAAAAGGTTATTGACG

Fln Alignment:

GFIJCBT03GWH8E___TMKQQLVHHTSNGCNINPGDLLGSGTISGSDPNSYGSLLELSWRGQNPIKLEGTDITRTFLKDGDEITL
D5ABT0_______________TIEQQLAHHTINGCNLRPGDLLGSGTISGPEPESFGSLLELSWDGKNPLKL-GNNISRTFVEDGDEVIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain