SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75266

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene75266
CCCTTTGATTTCACAAGCTGTCATTCGCTCCAAAATCGCCGCCATGATCGCACGGACGGAAAGCGTGCAGAGTTGGCTGGAAAATATAACGTATCAGATGTGTCACATGACGTACAAACAACAAGCTCAGAAGCTCGCTGGTCAAATTGCGTTCTTGAAGAGCTATAGCACGCGGTGCGCACAGGATACCGCCAGAGATGCTGTTCAGATCTTTGGTGGTCGTGGTATCACACGGACAGGTA

Ace file of the UniGene sp_v3.0_unigene75266

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl-CoA-dehydrogenase, peroxisomal n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0DA20_LACBS	-	-	5.0e-32	83%
FL-Next	tr=Cytochrome b5-like Heme/Steroid binding fusion with acyl-coa dehydrogenase; Micromonas sp. (strain RCC299 / NOUM17) (Picoplanktonic green alga).	-	-	0.0	54%

Source	Gene names
Sma3	MICPUCDRAFT_13489; MICPUN_55953; OSTLU_12783; Ot08g00800;

Source	GOs	Term	Type	Identity
Sma3	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3		IPR013764	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C1DYG2

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 80 - 524

Fln protein: PLISQAVIRSKIAAMIARTESVQSWLENITYQMCHMTYKQQAQKLAGQIAFLKSYSTRCAQDTARDAVQIFGGRGITRTG

Protein Length: 81

Fln nts: CCCTTTGATTTCACAAGCTGTCATTCGCTCCAAAATCGCCGCCATGATCGCACGGACGGAAAGCGTGCAGAGTTGGCTGGAAAATATAACGTATCAGATGTGTCACATGACGTACAAACAACAAGCTCAGAAGCTCGCTGGTCAAATTGCGTTCTTGAAGAGCTATAGCACGCGGTGCGCACAGGATACCGCCAGAGATGCTGTTCAGATCTTTGGTGGTCGTGGTATCACACGGACAGGTA

Fln Alignment:

GFIJCBT03HJ72I___LISQAVIRSKIAAMIARTESVQSWLENITYQMCHMTYKQQAQKLAGQIAFLKSYSTRCAQDTARDAVQIFGGRGITRTG
C1DYG2_______________LIDQPVIRAKLARLASQVEGVQAWLESVTFAMKHTTHEEQAAMLAGPIALLKHFCTRVANDVSDEACQIFGGRAITRTG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain