SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75262

Length: 315 nt

UniGene Fasta

>sp_v3.0_unigene75262
GCTGGTTTTGTATGGACAAGTCAGAGCCCAAGCATATATTAATGAAAGAATATTGCCTTCTGCGGCGACTGTCATGGGCAATTACCTAGGTAGGAAACTTAACCTTGGAAAGGTTCATAGGATTTCTCCTCTTGGGTTTGCATTGGAATCCTGTTCCTTGGGTCCCCAACCTGAAGAGTTTTCCTGTGGGGAGCTTCCAAATGTTAAAGTTCGCATCCGGCCTTGGGCCAGCCTACAGAGGCGACAGGTAGTAGTTGATGCTGTATTGGTGCAACCGCATGTTTTGGTTGCTCAGAAGGAGGACTGGACATGGCT

Ace file of the UniGene sp_v3.0_unigene75262

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	52%

Source	Gene names
Sma3	At2g25660; GSVIVT00032534001; OsI_00642; OsJ_00611; PHYPADRAFT_196483; POPTRDRAFT_578137; RCOM_0804300; VITISV_022809;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Protein of unknown function DUF490	IPR007452	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25660.1	emb2410 embryo defective 2410 chr2:10916456-10927390 REVERSE LENGTH=2166	4.0e-31	51%
RefSeq	Arabidopsis thaliana	NP_180137.3	embryo defective 2410 protein [Arabidopsis thaliana]	5.0e-31	51%
RefSeq	Populus trichocarpa	XP_002324261.1	predicted protein [Populus trichocarpa]	7.0e-35	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IKQ8

Fln msg: Distance to subject end: 469 aas, your sequence is shorter than subject: 104 - 693

Fln protein: LVLYGQVRAQAYINERILPSAATVMGNYLGRKLNLGKVHRISPLGFALESCSLGPQPEEFSCGELPNVKVRIRPWASLQRRQVVVDAVLVQPHVLVAQKEDWTW

Protein Length: 105

Fln nts: GCTGGTTTTGTATGGACAAGTCAGAGCCCAAGCATATATTAATGAAAGAATATTGCCTTCTGCGGCGACTGTCATGGGCAATTACCTAGGTAGGAAACTTAACCTTGGAAAGGTTCATAGGATTTCTCCTCTTGGGTTTGCATTGGAATCCTGTTCCTTGGGTCCCCAACCTGAAGAGTTTTCCTGTGGGGAGCTTCCAAATGTTAAAGTTCGCATCCGGCCTTGGGCCAGCCTACAGAGGCGACAGGTAGTAGTTGATGCTGTATTGGTGCAACCGCATGTTTTGGTTGCTCAGAAGGAGGACTGGACATGGCT

Fln Alignment:

GFIJCBT03GDYZE___LVLYGQVRAQAYINERILPSAATVMGNYLGRKLNLGKVHRISPLGFALESCSLGPQPEEFSCGELPNVKVRIRPWASLQRRQVVVDAVLVQPHVLVAQKEDWTW
B9IKQ8_______________LVWYGQNRAKCYIEAKLLPSVCSVLSDYVQREIDFGKVRNVSPLSVTLESCSIGPHGEEFSCGEVPTMKLKLRPFASLRRGKIVIDAILSHPSVMVVQKKDYTW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain