SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75203

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene75203
TCACACAGACAGACGATTACAACAGCATCTGTGTCGAGATCGGCCTTGTTTCATCCTACTCAGCTTATTGATGGAGAAGGCAATTTCAATGAAGCTGGTCTTGACAAGTGCATGAAGGCCATGAAATTGGCAGATCAGGGACTCTCATATGCTGTAGTTTCTATCATGGGCCCCCAAAGCAGCGGAAAGAGCACACTCTTGAATAATCTTTTCCATACAAATTTCAGAGAGATGGATGCA

Ace file of the UniGene sp_v3.0_unigene75203

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	root hair defective 3 GTP-binding protein [Triticum aestivum]	-	-	6.0e-19	78%
FL-Next	sp=Protein ROOT HAIR DEFECTIVE 3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	75%
Sma3	Protein SEY1, putative	-	-	1.426e-09	-

Source	Gene names
Sma3	At3g13870; At5g45160; GSVIVT00034171001; GSVIVT00035518001; LOC_Os12g41170; Os01g0575000; Os12g0604600; OsI_02526; OsI_39022; OsJ_02311; OsJ_36787; PHYPADRAFT_206384; PHYPADRAFT_226877; PHYPADRAFT_234372; POPTRDRAFT_280434; POPTRDRAFT_588159; POPTRDRAFT_7

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-
Sma3	cell tip growth	GO:0009932	Biological Process	-
Sma3	root epidermal cell differentiation	GO:0010053	Biological Process	-
Sma3	actin cytoskeleton organization	GO:0030036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Root hair defective 3 GTP-binding	IPR008803	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) chr5:18264991-18270035 FORWARD LENGTH=834	2.0e-22	75%
RefSeq	Arabidopsis thaliana	NP_199329.1	Root hair defective 3 GTP-binding protein (RHD3) [Arabidopsis thaliana]	2.0e-22	75%
RefSeq	Populus trichocarpa	XP_002332317.1	predicted protein [Populus trichocarpa]	2.0e-18	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q0JLS6

Fln msg: Distance to subject end: 739 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 80 - 806

Fln protein: SHRQTITTASVSRSALFHPTQLIDGEGNFNEAGLDKCMKAMKLADQGLSYAVVSIMGPQSSGKSTLLNNLFHTNFREMDA

Protein Length: 81

Fln nts: TCACACAGACAGACGATTACAACAGCATCTGTGTCGAGATCGGCCTTGTTTCATCCTACTCAGCTTATTGATGGAGAAGGCAATTTCAATGAAGCTGGTCTTGACAAGTGCATGAAGGCCATGAAATTGGCAGATCAGGGACTCTCATATGCTGTAGTTTCTATCATGGGCCCCCAAAGCAGCGGAAAGAGCACACTCTTGAATAATCTTTTCCATACAAATTTCAGAGAGATGGATGCA

Fln Alignment:

GFIJCBT03HFTNN___TQLIDGEGNFNEAGLDKCMKAMKLADQGLSYAVVSIMGPQSSGKSTLLNNLFHTNFREMDA
Q0JLS6_______________TQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRTNFREMDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain