SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75199

Length: 118 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene75199
TGTTTTCTTGGGATATCTTCATTGCCCGGACCAATGAGAAGCACTCAGAAGTCGCCGCATCTTACATTGAGACACAGTTGTTGAAAACACGGGAGCAACATCAACAGCAGCAGCAGCA

Ace file of the UniGene sp_v3.0_unigene75199 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%
Sma3	Transcriptional corepressor LEUNIG	-	-	4.542e-08	-

Source	Gene names
Sma3	At2g32700; At4g32551; GSVIVT00033847001; L23H3.30; LUG; OJ1293_E04.10; OSIGBa0157K09-H0214G12.8; OSJNBa0053L11.32; OSJNBa0090K04.16-1; OSJNBb0065L13.11; Os01g0607400; Os02g0813800; Os04g0510200; OsI_00622; OsI_02792; OsI_09411; OsI_16603; OsJ_00592; OsJ_0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	single-stranded DNA binding	GO:0003697	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G32551.2	-	6.0e-14	83%
RefSeq	Arabidopsis thaliana	NP_567896.1	transcriptional corepressor LEUNIG [Arabidopsis thaliana]	8.0e-14	83%
RefSeq	Populus trichocarpa	XP_002324837.1	predicted protein [Populus trichocarpa]	1.0e-15	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FUY2

Fln msg: Distance to subject end: 835 aas, your sequence is shorter than subject: 38 - 931

Fln protein: FSWDIFIARTNEKHSEVAASYIETQLLKTREQHQQQQQ

Protein Length: 39

Fln nts: TGTTTTCTTGGGATATCTTCATTGCCCGGACCAATGAGAAGCACTCAGAAGTCGCCGCATCTTACATTGAGACACAGTTGTTGAAAACACGGGAGCAACATCAACAGCAGCAGCAGCA

Fln Alignment:

GFIJCBT03FJORP___WDIFIARTNEKHSEVAASYIETQLLKTREQHQQQQQ
Q9FUY2_______________WDIFIARTNEKHSEVAASYIETQMIKAREQQLQQSQ

SSRs (tot: 1)

Start position	End position	Sequence	Length
1	14	TGC TGC TGC TGC TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain